Browse Element(s) Details


Os.12341.1.S1_at

Description gb:AK067634.1
DB_XREF= gi:32977652
TID=Os.12341.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108A04, full insert sequence.
FL= gb:AK067634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4481011/11Syntaxin 81, putative, expressed
LOC_Os12g058102/11Syntaxin 81, putative
LOC_Os03g393301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12341.1.S1_at--25--1032Chr12:2679132..2679156 (25 bp)
AGGTCTCTACTGCACCACTAAGAGT
LOC_Os12g05810
Os.12341.1.S1_at--590--7113Chr12:2679348..2679372 (25 bp)
GTCAGCACTTAATCATCTCATGTCA
LOC_Os12g05810
Os.12341.1.S1_at--781--3233Chr04:26311857..26311881 (25 bp)
CAAGCTCAGCAGATCCAGTATTTAT
LOC_Os04g44810
Os.12341.1.S1_at--364--5512Chr12:2680299..2680323 (25 bp)
GAACAAGGAGCTATCCCAGGCGATC
NONE
Os.12341.1.S1_at--114--3273Chr12:2680329..2680353 (25 bp)
CAACAGCAGCAGTAGAACCTTCCTC
NONE
Os.12341.1.S1_at--137--10671Chr04:26312429..26312453 (25 bp)
TTCCGTTCTCTTTCTGGATTGGTAC
LOC_Os04g44810
Os.12341.1.S1_at--932--5392Chr12:2680412..2680436 (25 bp)
GAAGCTTATGTAAACGCCGTGATTT
NONE
Os.12341.1.S1_at--475--1211Chr04:26312511..26312535 (25 bp)
AGTTATCAGTCAATCCATGTCTCGC
LOC_Os04g44810
Os.12341.1.S1_at--355--752Chr12:2680482..2680506 (25 bp)
ATGTCTCGCTAGGTTTACTGGCCTT
NONE
Os.12341.1.S1_at--318--431Chr04:26312577..26312601 (25 bp)
ATCATTTGCGAATCTGAGACTCTGC
LOC_Os04g44810
Os.12341.1.S1_at--222--5992Chr12:2680539..2680563 (25 bp)
GAGACTCTGCCGCAAACGTGACAAA
NONE
Target Sequence 
AGGTCTCTACTGCACCACTAAGAGTTCAAGAACAACTCTTGGATGATGAAACAAGAGCTCTTCAGGTGGAGTTGACAAAT
CTTCTTGATGCTGTCCAAGAAACAGAGACAAAGATGATAGAGATGTCAGCACTTAATCATCTCATGTCAACACATGTTCT
ACAACAAGCTCAGCAGATCCAGTATTTATATGACCAGGCAGTTGAAGCTACAAACAATGTGGAGCGTGGGAACAAGGAGC
TATCCCAGGCGATCCAGCGCAACAGCAGCAGTAGAACCTTCCTCCTACTTTTCTTCTTTGTTCTTACCTTTTCCGTTCTC
TTTCTGGATTGGTACAGCAAATGAAGCTTATGTAAACGCCGTGATTTTTTTTCCCATTCTGAAAGTGGATCAAGTTATCA
GTCAATCCATGTCTCGCTAGGTTTACTGGCCTTTTACGTGCAATGTATTACTGCATTCATCATTTGCGAATCTGAGACTC
TGCCGCAAACGTGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis