Browse Element(s) Details


Os.12381.1.S1_s_at

Description gb:AK106022.1
DB_XREF= gi:32991231
TID=Os.12381.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-C04, full insert sequence.
FL= gb:AK106022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4425011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44220OsAffx.28898.1.S1_at11/117+26429266..26429583hypothetical protein
LOC_Os07g44230Os.53888.1.S1_at11/117+26431006..26433562ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44250Os.12381.1.S1_s_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.12381.1.S1_x_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.43269.1.S1_x_at7/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12381.1.S1_s_at--403--4811Chr07:26444092..26444116 (25 bp)
GCTCTGAATTCTGATAGATGGTAAT
LOC_Os07g44250
Os.12381.1.S1_s_at--375--5211Chr07:26444087..26444111 (25 bp)
GAATTCTGATAGATGGTAATTAACA
LOC_Os07g44250
Os.12381.1.S1_s_at--1020--2071Chr07:26444065..26444089 (25 bp)
ACATATAATACTGCTATACACGGTG
LOC_Os07g44250
Os.12381.1.S1_s_at--685--231Chr07:26444063..26444087 (25 bp)
ATATAATACTGCTATACACGGTGTG
LOC_Os07g44250
Os.12381.1.S1_s_at--1156--351Chr07:26444061..26444085 (25 bp)
ATAATACTGCTATACACGGTGTGAT
LOC_Os07g44250
Os.12381.1.S1_s_at--750--9751Chr07:26444060..26444084 (25 bp)
TAATACTGCTATACACGGTGTGATG
LOC_Os07g44250
Os.12381.1.S1_s_at--609--9911Chr07:26444057..26444081 (25 bp)
TACTGCTATACACGGTGTGATGCGT
LOC_Os07g44250
Os.12381.1.S1_s_at--800--4871Chr07:26444053..26444077 (25 bp)
GCTATACACGGTGTGATGCGTGATT
LOC_Os07g44250
Os.12381.1.S1_s_at--1151--3971Chr07:26444045..26444069 (25 bp)
CGGTGTGATGCGTGATTTATTTCCA
LOC_Os07g44250
Os.12381.1.S1_s_at--1142--7731Chr07:26444044..26444068 (25 bp)
GGTGTGATGCGTGATTTATTTCCAT
LOC_Os07g44250
Os.12381.1.S1_s_at--76--8691Chr07:26444042..26444066 (25 bp)
TGTGATGCGTGATTTATTTCCATCG
LOC_Os07g44250
Target Sequence 
GCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12381.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis