Browse Element(s) Details


Os.15089.1.S1_at

Description gb:AK060245.1
DB_XREF= gi:32970263
TID=Os.15089.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G06, full insert sequence.
FL= gb:AK060245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0501011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein
LOC_Os07g05040Os.5363.1.S1_at11/117+2221229..2223216cadmium-induced protein, putative, expressed
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15089.1.S1_at--208--9931Chr07:2208557..2208581 (25 bp)
TACTGTTATATGATGCCTGAGGGAC
LOC_Os07g05010
Os.15089.1.S1_at--411--5651Chr07:2208579..2208603 (25 bp)
GACATGCATCTGGTGAGTTCTTACA
LOC_Os07g05010
Os.15089.1.S1_at--92--3912Chr07:2208657..2208681 (25 bp)
CTGGATAAGCATAACCATCGGTTCT
LOC_Os07g05010
Os.15089.1.S1_at--715--6733Chr10:14679509..14679531 (23 bp)
GTTCTTCAAGATTGCACATGGTCTA
NONE
Os.15089.1.S1_at--538--491Chr07:2208783..2208807 (25 bp)
ATCGGCAGAAATTTTGCTCCTGAAC
LOC_Os07g05010
Os.15089.1.S1_at--13--2411Chr07:2208809..2208833 (25 bp)
AAACAGCTACCACATCTGTATCTCC
LOC_Os07g05010
Os.15089.1.S1_at--205--491Chr07:2208822..2208846 (25 bp)
ATCTGTATCTCCTCTTGCCTTGGTA
LOC_Os07g05010
Os.15089.1.S1_at--946--7831Chr07:2208843..2208867 (25 bp)
GGTACTCATTGCCTCATCAATGTAA
LOC_Os07g05010
Os.15089.1.S1_at--315--8751Chr07:2208863..2208887 (25 bp)
TGTAACTTTCACCTTTCTCATGATC
LOC_Os07g05010
Os.15089.1.S1_at--390--3511Chr07:2208881..2208905 (25 bp)
CATGATCTTGACTGTACTACTTGCA
LOC_Os07g05010
Os.15089.1.S1_at--728--2071Chr07:2208984..2209008 (25 bp)
ACATTATTCGATCAATCTCCATCAT
LOC_Os07g05010
Target Sequence 
TACTGTTATATGATGCCTGAGGGACATGCATCTGGTGAGTTCTTACAAGAACAAATCAAGGAACCAAATGACAGTTTTGG
TTGCTATGTTGATTTTTCAACTGGATAAGCATAACCATCGGTTCTTCAAGATTGCACATGGTCTAAAGCAGAAAAAGAAC
TTAGGTAGACTGAACCATGTNCAATTCAGATATATGGCACATCAAGATCATTGGAAATGCGCAGATATCGGCAGAAATTT
TGCTCCTGAACAAAACAGCTACCACATCTGTATCTCCTCTTGCCTTGGTACTCATTGCCTCATCAATGTAACTTTCACCT
TTCTCATGATCTTGACTGTACTACTTGCAACTAGTCGAATTCCCTGCACAATTGTGCAGTAGACAGTATAGCAAATATGA
AATTGCATTTCTTGTACATCTATAATCACATTATTCGATCAATCTCCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis