Browse Element(s) Details


Os.15434.2.S1_at

Description gb:NM_187477.1
DB_XREF= gi:34902039
TID=Os.15434.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1364E02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1364E02.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g161208/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15434.2.S1_at--677--2531Chr03:8872713..8872737 (25 bp)
AACTGCATGAAATAAGTTTCCCCTA
LOC_Os03g16120
Os.15434.2.S1_at--299--4591Chr03:8872709..8872733 (25 bp)
GCATGAAATAAGTTTCCCCTACCAT
LOC_Os03g16120
Os.15434.2.S1_at--1070--8951Chr03:8872706..8872730 (25 bp)
TGAAATAAGTTTCCCCTACCATGCA
LOC_Os03g16120
Os.15434.2.S1_at--769--3071Chr03:8872703..8872727 (25 bp)
AATAAGTTTCCCCTACCATGCAGAT
LOC_Os03g16120
Os.15434.2.S1_at--41--9791Chr03:8872701..8872725 (25 bp)
TAAGTTTCCCCTACCATGCAGATGA
LOC_Os03g16120
Os.15434.2.S1_at--255--1211Chr03:8872699..8872723 (25 bp)
AGTTTCCCCTACCATGCAGATGAAG
LOC_Os03g16120
Os.15434.2.S1_at--890--10651Chr03:8872696..8872720 (25 bp)
TTCCCCTACCATGCAGATGAAGCTT
LOC_Os03g16120
Os.15434.2.S1_at--20--4211Chr03:8872694..8872718 (25 bp)
CCCCTACCATGCAGATGAAGCTTCT
LOC_Os03g16120
Os.15434.2.S1_at--942--1751NONE
ACCTCGCACGCCTATTGAAAGGATA
NONE
Os.15434.2.S1_at--656--3791NONE
CTCGCACGCCTATTGAAAGGATATG
NONE
Os.15434.2.S1_at--776--4111NONE
CGCACGCCTATTGAAAGGATATGAA
NONE
Target Sequence 
AACTGCATGAAATAAGTTTCCCCTACCATGCAGATGAAGCTTCTGAATTTGCTGCACGCAAGGCATTTTCAATGGAAGAT
AGGGAAAAACTTGAAAGCCAATTGCATGATATGGCTTTGATGGTTGAGAGGCTAGAGGGCAGCCGCCAAAAGTTGTTAAT
GGAGATTGATTCTCAATCATCAGAAATAGAAAAGCTGTTTGAGGAGAACTCAGCCTTGTCTACTTCATACCAAGAAGCTG
TAGCTGTTACAATGCAATGGGAAAACCAGGTAAAAGATTGTCTCAAGCAAAATGAAGAGCTACGCTCTCACTTAGAGAAG
TTAAGACTTGAGCAAGCTACTCTATTGAAAACAAGTAATACCACTATCCAGCCAGATGGGCAGAACGAGACCAGCATTTC
ATTCCCGCCAGAGTTTGTAACTGAGAATCTCTCCCTAAAGGATCAGCTCATCAAAGAACAGAGCAGATCCGAGGGGTTGT
CGGCAGAAATAATGAAACTTTCAGCTGAACTCAGAAAAGCGGTGCAAGCGCAGAATAACCTCGCACGCCTATTGAAAGGA
TATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15434.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis