Browse Element(s) Details


Os.15918.1.S1_x_at

Description gb:AK119609.1
DB_XREF= gi:37989232
TID=Os.15918.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F09, full insert sequence.
FL= gb:AK061411.1 gb:AK119609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6306011/11P21-Rho-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63040Os.51390.1.S1_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.51390.1.S1_x_at5/113+35586951..35591762expressed protein
LOC_Os03g63040Os.5292.1.S1_at4/113+35586951..35591762expressed protein
LOC_Os03g63050OsAffx.10401.1.S1_at6/113+35592938..35593615hypothetical protein
LOC_Os03g63060Os.15918.1.S1_x_at11/113+35596426..35597816P21-Rho-binding domain containing protein, expressed
LOC_Os03g63074Os.16644.1.A1_at11/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_x_at9/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_at1/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0010215biological_processcellulose microfibril organization
GO:0030833biological_processregulation of actin filament polymerization
GO:0016324cellular_componentapical plasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15918.1.S1_x_at--88--1591Chr03:35597218..35597242 (25 bp)
AGCTCATGCCTGAACTGAACACACA
LOC_Os03g63060
Os.15918.1.S1_x_at--553--2471Chr03:35597235..35597259 (25 bp)
AACACACACTGCAACTCTGAATTCT
LOC_Os03g63060
Os.15918.1.S1_x_at--691--4711Chr03:35597275..35597299 (25 bp)
GCTGGCTTGCTGCAGTATTAGCTAG
LOC_Os03g63060
Os.15918.1.S1_x_at--52--151Chr03:35597315..35597339 (25 bp)
ATTACTGCTGCATCATGAATCCATG
LOC_Os03g63060
Os.15918.1.S1_x_at--261--652Chr03:35597479..35597503 (25 bp)
ATGCATGCATGGCTGTGTTTCCTTC
LOC_Os03g63060
Os.15918.1.S1_x_at--466--6871Chr03:35597524..35597548 (25 bp)
GTTTGGCCTTCAATTCATTTGGTTG
LOC_Os03g63060
Os.15918.1.S1_x_at--13--6631Chr03:35597545..35597569 (25 bp)
GTTGGGCATCAACGTGTTCAGTAGT
LOC_Os03g63060
Os.15918.1.S1_x_at--258--3571Chr03:35597665..35597689 (25 bp)
CATAATCTTCTTCTTTTGTTCTCTC
LOC_Os03g63060
Os.15918.1.S1_x_at--226--1591Chr03:35597704..35597728 (25 bp)
AGCTCTCTGCTGCTTTCTGTTAGCA
LOC_Os03g63060
Os.15918.1.S1_x_at--517--6371Chr03:35597732..35597756 (25 bp)
GATCCTAGGGATTAACTGTTCTTGT
LOC_Os03g63060
Os.15918.1.S1_x_at--341--51Chr03:35597760..35597784 (25 bp)
ATTGTCTTGTCAGTAGCTAGCTCCT
LOC_Os03g63060
Target Sequence 
AGCTCATGCCTGAACTGAACACACACTGCAACTCTGAATTCTCAGTCTCCTCTCCTTGCTGGCTTGCTGCAGTATTAGCT
AGCAAAAGAAAAGCATTATTACTGCTGCATCATGAATCCATGCATGCATGCAACTGATGAATGATTAACAACATGCAGGC
ATGGGGTAGTGCTCTTGATTTGATTTGCATATTGATTAGTAGTTTCCATGTGGCTGTGTTGAACATCATTTCAATTCTCT
GAATGAATTGGTACTACATGCATGCATGCATGGCTGTGTTTCCTTCTTCTTCTTTTTTTTTTTTTTGGTTTGGCCTTCAA
TTCATTTGGTTGGGCATCAACGTGTTCAGTAGTGTGTACATAGTTACATGGGCATGTGAACCTGTACAAATTGTCATCAA
CGATATTGACAGTGCTTGCTATCTGTAATAATCTCTACATGTGAGCTTCATAATCTTCTTCTTTTGTTCTCTCTCCCCTT
TTCTTCTAGCTCTCTGCTGCTTTCTGTTAGCATGTGATCCTAGGGATTAACTGTTCTTGTGTAATTGTCTTGTCAGTAGC
TAGCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15918.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis