Browse Element(s) Details


Os.15942.5.S1_x_at

Description gb:AK104594.1
DB_XREF= gi:32989803
TID=Os.15942.5
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0049O23.17 (OSJNBb0049O23.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C11, full insert sequence.
FL= gb:AK104594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3460010/11ABA/WDS induced protein, expressed
LOC_Os11g067201/11ABA/WDS induced protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34550OsAffx.26326.1.S1_at10/114+20722436..20725489hypothetical protein
LOC_Os04g34560Os.15412.1.S1_x_at8/114+20725737..20727018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g34570OsAffx.26327.3.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_s_at8/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.16519.1.S1_at3/114+20727524..20733043expressed protein
LOC_Os04g34580OsAffx.26328.1.S1_at11/114+20736777..20737918FAD binding domain containing protein, expressed
LOC_Os04g34590OsAffx.11069.5.S1_x_at11/114+20738513..20741527hypothetical protein
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_x_at11/114+20762269..20765400expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_at11/114+20762269..20765400expressed protein
LOC_Os04g34620Os.20989.1.S1_at10/114+20762269..20765400expressed protein
LOC_Os04g34630Os.5130.1.S1_at11/114+20767108..20768449Peroxidase 72 precursor, putative, expressed
LOC_Os04g34640OsAffx.14137.1.S1_at11/114+20769808..20770973hypothetical protein
LOC_Os04g34640OsAffx.10222.1.S1_x_at1/114+20769808..20770973hypothetical protein
LOC_Os04g34650OsAffx.14902.1.A1_at3/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34650Os.27632.1.S1_at1/114+20772830..20777291retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15942.5.S1_x_at--778--2211Chr04:20748154..20748174 (21 bp)
ACAAGAACAAGGAGCGCCTCGGCGA
LOC_Os04g34600
Os.15942.5.S1_x_at--1065--4331Chr04:20748016..20748036 (21 bp)
CCATGTACGAGAGGCACCAGGCGAA
LOC_Os04g34600
Os.15942.5.S1_x_at--598--7891Chr04:20747917..20747941 (25 bp)
GGTTCGCGTTCCACGAGCACCACGA
LOC_Os04g34600
Os.15942.5.S1_x_at--827--2732Chr11:3274695..3274719 (25 bp)
AAGAAGCACCACCTCTTCGGCTGAT
LOC_Os11g06720
Os.15942.5.S1_x_at--70--10611Chr04:20747789..20747813 (25 bp)
TTCGGCTGATGATCCATCGATCGAT
LOC_Os04g34600
Os.15942.5.S1_x_at--699--7671NONE
GGGTTTTGTACGTATGGGCTCAGTA
NONE
Os.15942.5.S1_x_at--143--7591Chr04:20747655..20747679 (25 bp)
GGGCTCAGTATGTGTACACCTCGTA
LOC_Os04g34600
Os.15942.5.S1_x_at--58--7451Chr04:20747644..20747668 (25 bp)
GTGTACACCTCGTATATGGTATGGA
LOC_Os04g34600
Os.15942.5.S1_x_at--1--811Chr04:20747629..20747653 (25 bp)
ATGGTATGGATGTACGTATAAGCGT
LOC_Os04g34600
Os.15942.5.S1_x_at--833--1891Chr04:20747616..20747640 (25 bp)
ACGTATAAGCGTATAGTGTGTACTA
LOC_Os04g34600
Os.15942.5.S1_x_at--1077--1691Chr04:20747590..20747614 (25 bp)
ACCAATAAAGCTATCTGTTGCTCTG
LOC_Os04g34600
Target Sequence 
ACAAGAACAAGGAGCGCCTCGGCGAGGTGGGCGCCCTCGCCGCCGGCGCCTTCGCCATGTACGAGAGGCACCAGGCGAAG
AAGGACCCGGAGAACGCGCAGCGGCACAGGATCGAGGAGGGCGTGGCGGCGGCGGCGGCGCTGGGGAGCGGCGGGTTCGC
GTTCCACGAGCACCACGACAAGAAGGAGGCCAAGCAGGCGGCGAAGGACGCCGAGGAGGAGGCGGAGGAGGAGTCCGGCT
CCGGCGCCCGCGGCGGCGAGGGGAAGAAGAAGCACCACCTCTTCGGCTGATGATCCATCGATCGATCGCGCCATGCATGC
GGCGGCGGCGGCGCCATGGCCGGCGTCCGCGCGCACGCGTAAGGTGTGGCCATGGGCGTGTGCAGCTGAATAAGAGCCGG
GGTTTTGTACGTATGGGCTCAGTATGTGTACACCTCGTATATGGTATGGATGTACGTATAAGCGTATAGTGTGTACTATA
CCAATAAAGCTATCTGTTGCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15942.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis