Browse Element(s) Details


Os.16772.1.S1_at

Description gb:AK066474.1
DB_XREF= gi:32976492
TID=Os.16772.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070L06, full insert sequence.
FL= gb:AK066474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2701011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26980Os.31640.1.S1_at1/118+16349615..16350007hypothetical protein
LOC_Os08g26990OsAffx.29407.3.S1_x_at8/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g26990OsAffx.29407.3.S1_at7/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g26990OsAffx.29407.1.S1_at2/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g27000Os.41695.15.S1_s_at11/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.2.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.3.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.5.S1_x_at2/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.4.S1_x_at1/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27010Os.16772.1.S1_at11/118+16373296..16377474expressed protein
LOC_Os08g27020OsAffx.5946.1.S1_at11/118+16379839..16380353expressed protein
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16772.1.S1_at--340--5191Chr08:16375055..16375079 (25 bp)
GAATTCCAAGGCGTAGTGCACCTAT
LOC_Os08g27010
Os.16772.1.S1_at--120--8371Chr08:16375064..16375088 (25 bp)
GGCGTAGTGCACCTATTTTACAAAA
LOC_Os08g27010
Os.16772.1.S1_at--670--5651Chr08:16376953..16376975 (23 bp)
GACAGGCCAAATTCACATCCTTTTT
LOC_Os08g27010
Os.16772.1.S1_at--428--671Chr08:16377116..16377140 (25 bp)
ATGAAGTTCGTCTTATCTCAGAAAC
LOC_Os08g27010
Os.16772.1.S1_at--1012--10431Chr08:16377144..16377168 (25 bp)
TTAGGAAACACACAGGACTCGCAGT
LOC_Os08g27010
Os.16772.1.S1_at--87--10391Chr08:16377202..16377226 (25 bp)
TTTTCCCTTGTTCCACTAATTTGTG
LOC_Os08g27010
Os.16772.1.S1_at--262--6791Chr08:16377235..16377259 (25 bp)
GTTAGTATTCTCAGAGTTCTGCCAT
LOC_Os08g27010
Os.16772.1.S1_at--158--171Chr08:16377258..16377282 (25 bp)
ATTATATGCATCATGGCTGCTTTTC
LOC_Os08g27010
Os.16772.1.S1_at--203--4771Chr08:16377273..16377297 (25 bp)
GCTGCTTTTCTGTCTACTGGTTATA
LOC_Os08g27010
Os.16772.1.S1_at--223--1551Chr08:16377317..16377341 (25 bp)
AGCATTTTTCATGTGCTTTTGTGCA
LOC_Os08g27010
Os.16772.1.S1_at--631--7931Chr08:16377387..16377411 (25 bp)
GGATTCACAGAGTTCTCCATACGTA
LOC_Os08g27010
Target Sequence 
GAATTCCAAGGCGTAGTGCACCTATTTTACAAAACATTCGGGAAGAAGTAACTGATGATGGGAAGTACAGTTTAGTACTT
GTATTTGAAGCCAAAGCATTGGAGATATCCGATTTTGAGAAGAGACAGGCCAAATTCACATCCTTTTTTGGTCCTGGGAT
TAAGGCAGAAATTGGAAAAGGTGGTGATGATCTATATGAAGTTCGTCTTATCTCAGAAACTACTTAGGAAACACACAGGA
CTCGCAGTTTCCTTTTCTGCTAATATACCAGAAAAATGTTTTTTTTCCCTTGTTCCACTAATTTGTGTATATGATGTTAG
TATTCTCAGAGTTCTGCCATTATATGCATCATGGCTGCTTTTCTGTCTACTGGTTATAGTCTGTGTGACGGAGAAATAGC
ATTTTTCATGTGCTTTTGTGCACATGCACAAATGAAAATGTGGCTGTAATATGCATGTAAATTGACTGGATTCACAGAGT
TCTCCATACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis