Browse Element(s) Details


Os.16927.1.S1_at

Description gb:AK065057.1
DB_XREF= gi:32975075
TID=Os.16927.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001J07, full insert sequence.
FL= gb:AK065057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5617011/11PAP-specific phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56210Os.8453.2.S1_at11/112+34372830..34376223Dcp2, box A domain containing protein, expressed
LOC_Os02g56220OsAffx.24889.1.S1_at11/112+34382063..34383695expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0009409biological_processresponse to cold
GO:0009628biological_processresponse to abiotic stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009968biological_processnegative regulation of signal transduction
GO:0016481biological_processnegative regulation of transcription
GO:0048015biological_processphosphoinositide-mediated signaling
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0008441molecular_function3'(2'),5'-bisphosphate nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16927.1.S1_at--1094--331Chr02:34357269..34357293 (25 bp)
ATAATAGCCTGTTCCGGACCATTGC
LOC_Os02g56170
Os.16927.1.S1_at--985--8091Chr02:34357254..34357278 (25 bp)
GGACCATTGCTTCATCACAGAATTG
LOC_Os02g56170
Os.16927.1.S1_at--446--5171Chr02:34357215..34357239 (25 bp)
GCAAGCTGGAACTCATCAACACTGT
LOC_Os02g56170
Os.16927.1.S1_at--237--3291Chr02:34357120..34357144 (25 bp)
CAAAGAATTGCTGTTGTGCCCTCTG
LOC_Os02g56170
Os.16927.1.S1_at--776--7291Chr02:34357105..34357129 (25 bp)
GTGCCCTCTGGTTGAAATCTGTTCA
LOC_Os02g56170
Os.16927.1.S1_at--908--3051Chr02:34357090..34357114 (25 bp)
AATCTGTTCAGCCATCTTATTCTCT
LOC_Os02g56170
Os.16927.1.S1_at--641--10211Chr02:34357073..34357097 (25 bp)
TATTCTCTGATAGTCTCCTACGGGA
LOC_Os02g56170
Os.16927.1.S1_at--131--10591Chr02:34356879..34356903 (25 bp)
TTCTCGCCGTTTCTGCATGTGAAGT
LOC_Os02g56170
Os.16927.1.S1_at--1117--5331Chr02:34356859..34356883 (25 bp)
GAAGTTGTCGGCGTAAGCTCCTGAA
LOC_Os02g56170
Os.16927.1.S1_at--465--1591Chr02:34356844..34356868 (25 bp)
AGCTCCTGAAGGTCACAACTTGATT
LOC_Os02g56170
Os.16927.1.S1_at--646--6771Chr02:34356817..34356841 (25 bp)
GTTACTCATCTGCAACTTGTTGGCA
LOC_Os02g56170
Target Sequence 
ATAATAGCCTGTTCCGGACCATTGCTTCATCACAGAATTGTGGGTGCTGTCGATGCAAGCTGGAACTCATCAACACTGTA
ATGCAAATAGTACGGATGATTACAGTTGGTTGGACCAATGTCGGTCATAGAATGCAAAGGTGAGTTTTACAAAGAATTGC
TGTTGTGCCCTCTGGTTGAAATCTGTTCAGCCATCTTATTCTCTGATAGTCTCCTACGGGAAAATCAGCTATTTCTAGGT
TGCAGAATTANTATGTGTTCATTTCAGTTCGATTTACGAACACGAAAGGTAATACTGCAGCACGTAATACGGTATATCCT
GTTGTTCAATAAGCAAGTTGTGAGACGAGATTGGCATATTATTAGCTGATTCAGTTAGTTCTTGTATCTCTTCTCGCCGT
TTCTGCATGTGAAGTTGTCGGCGTAAGCTCCTGAAGGTCACAACTTGATTAAGTTACTCATCTGCAACTTGTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis