Browse Element(s) Details


Os.17257.1.S1_x_at

Description gb:AK066744.1
DB_XREF= gi:32976762
TID=Os.17257.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088B01, full insert sequence.
FL= gb:AK066744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5325011/11FAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53210OsAffx.11583.1.S1_at11/111+30900983..30903135expressed protein
LOC_Os01g53220Os.35681.1.S1_at11/111+30909333..30910542HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g53230OsAffx.23771.1.S1_at1/111+30911948..30912271hypothetical protein
LOC_Os01g53240Os.8061.1.S1_at11/111+30916707..30919383RD22, putative, expressed
LOC_Os01g53250Os.17257.1.S1_x_at11/111+30920349..30925365FAD binding domain containing protein, expressed
LOC_Os01g53260Os.30386.1.S1_at11/111+30931143..30934925WRKY transcription factor 45, putative, expressed
LOC_Os01g53280OsAffx.11584.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53280Os.36029.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53294Os.3427.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.2323.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_at10/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_x_at9/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_x_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.3.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_x_at2/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.4.S1_x_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294Os.4760.1.S1_at1/111+30949519..30961252NADPH oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009698biological_processphenylpropanoid metabolism
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0003958molecular_functionNADPH-hemoprotein reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17257.1.S1_x_at--81--3791Chr01:30920895..30920919 (25 bp)
CTCGATATGGCTCAGGAAACTAGAA
LOC_Os01g53250
Os.17257.1.S1_x_at--1071--3111Chr01:30920860..30920884 (25 bp)
AATTTCACACTGAGACCTGGTCATA
LOC_Os01g53250
Os.17257.1.S1_x_at--172--511Chr01:30920794..30920818 (25 bp)
ATCGTCAGGTTTCCACAAATGTGTG
LOC_Os01g53250
Os.17257.1.S1_x_at--552--8551Chr01:30920724..30920748 (25 bp)
TGGAGAGGTATATTCACGTCCACAT
LOC_Os01g53250
Os.17257.1.S1_x_at--70--8191Chr01:30920658..30920682 (25 bp)
GGAAGACATAGCACGTCGGTTTAAC
LOC_Os01g53250
Os.17257.1.S1_x_at--124--10511Chr01:30920630..30920654 (25 bp)
TTCACTTCCGGCTGGATGATGAAGA
LOC_Os01g53250
Os.17257.1.S1_x_at--302--1371Chr01:30920512..30920536 (25 bp)
AGAGCATCACACACCAGCTCATGAT
LOC_Os01g53250
Os.17257.1.S1_x_at--314--8811Chr01:30920482..30920506 (25 bp)
TGATACCTCTGTATACCTTCGTTTC
LOC_Os01g53250
Os.17257.1.S1_x_at--225--3451Chr01:30920453..30920477 (25 bp)
CAGTTTCTGTTGGACTTCTAAGGAT
LOC_Os01g53250
Os.17257.1.S1_x_at--370--6331Chr01:30920431..30920455 (25 bp)
GATGCAGACTGTTGACACCGGTTGA
LOC_Os01g53250
Os.17257.1.S1_x_at--78--10091Chr01:30920406..30920430 (25 bp)
TAGGGATTCTTTAGTTCTTGCTACA
LOC_Os01g53250
Target Sequence 
CTCGATATGGCTCAGGAAACTAGAAAGGAACGGCAAATTTCACACTGAGACCTGGTCATAGTTATGGTAGTTTCTAATCN
AAATGGCTTAAAAATGTACNCATCGTCAGGTTTCCACAAATGTGTGGCAAATAACNAACAGAATTTTGGTGTAGATCAGT
GTTGTTAAAATTGGAGAGGTATATTCACGTCCACATNCATAAATGAAAAATAATTCCTGGACAAAACAATTATAATGGGA
AGACATAGCACGTCGGTTTAACCCNTTCACTTCCGGCTGGATGATGAAGATTTTGGAATGAGGATGAAGAGATATGGTTT
TGATTTTGGATACTCTTGATGAATGATGACACNANAAGAGAACATTTCATTAGAANTNTCAGGTGAGAGCATCACACACC
AGCTCATGATGCANTTTGATACCTCTGTATACCTTCGTTTCCANNCAGTTTCTGTTGGACTTCTAAGGATGCAGACTGTT
GACACCGGTTGATAGGGATTCTTTAGTTCTTGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17257.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis