Browse Element(s) Details


Os.17458.1.S1_at

Description gb:AK070654.1
DB_XREF= gi:32980678
TID=Os.17458.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023057G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057G20, full insert sequence.
FL= gb:AK070654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1088011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein
LOC_Os07g10890Os.38857.1.S1_a_at11/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10890OsAffx.16202.1.S1_at9/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10900Os.2987.3.S1_x_at2/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8980.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8272.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17458.1.S1_at--428--4011Chr07:5943942..5943966 (25 bp)
CGATGCTGCTTGTACCACCACCTTG
LOC_Os07g10880
Os.17458.1.S1_at--419--1731Chr07:5943961..5943985 (25 bp)
ACCTTGCCTGCCTGGAAGTTTTGCA
LOC_Os07g10880
Os.17458.1.S1_at--981--7271Chr07:5944078..5944102 (25 bp)
GTGCCTGATGACTGTGACGTCCGCA
LOC_Os07g10880
Os.17458.1.S1_at--212--1731Chr07:5944126..5944150 (25 bp)
ACCTCCTTTGGTCTCAAGTATGATA
LOC_Os07g10880
Os.17458.1.S1_at--184--9711Chr07:5944139..5944163 (25 bp)
TCAAGTATGATAAGGCCGGTGAACT
LOC_Os07g10880
Os.17458.1.S1_at--531--9071Chr07:5944182..5944206 (25 bp)
TGCTTACGCATCGATCTCATACCAG
LOC_Os07g10880
Os.17458.1.S1_at--1032--511Chr07:5944191..5944215 (25 bp)
ATCGATCTCATACCAGATTGCTGGC
LOC_Os07g10880
Os.17458.1.S1_at--251--6891Chr07:5944289..5944313 (25 bp)
GTATCAGGTGTTATTGTCCTACTCA
LOC_Os07g10880
Os.17458.1.S1_at--382--791Chr07:5944367..5944391 (25 bp)
ATGGTCGCCTTGTCAATTTGGTCCA
LOC_Os07g10880
Os.17458.1.S1_at--491--10271Chr07:5944410..5944434 (25 bp)
TTTGCTGTAAACTGCTTTTCCCTCT
LOC_Os07g10880
Os.17458.1.S1_at--650--10391Chr07:5944425..5944449 (25 bp)
TTTTCCCTCTTGTAGCACAATGCTT
LOC_Os07g10880
Target Sequence 
CGATGCTGCTTGTACCACCACCTTGCCTGCCTGGAAGTTTTGCAAGGAGGTGATGTTCAAGAAGGGCTTCACCGGGTACT
GGGGGGCTACGCTCGTGTACATGGNCGACANCAGNTTCTGCNTGGNTGGATTNCCGGGTGCCTGATGACTGTGACGTCCG
CACCACCCTCCGTGTGCTCACCATCACCTCCTTTGGTCTCAAGTATGATAAGGCCGGTGAACTGNGTCACCNACTCGGTA
CCGNTGCTTACGCATCGATCTCATACCAGATTGCTGGCAAATNTTAAGAGACTCGAGGATCCTATANCATTCTGGATGTA
ATTTNATTNATGATCATGCAAAACTAGTNAGTAGTATCAGGTGTTATTGTCCTACTCAGNTNTTATTATATATATATGTG
AGCATNCAATTTTGGCATAACCTGTTTTATNATNATGGTCGCCTTGTCAATTTGGTCCANTCTTTGTCAGCNCTGTGTTT
TGCTGTAAACTGCTTTTCCCTCTTGTAGCACAATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis