Browse Element(s) Details


Os.17862.1.S1_at

Description gb:AK103156.1
DB_XREF= gi:32988365
TID=Os.17862.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NBS-LRR type resistance protein (OJ1351_C05.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121A14, full insert sequence.
FL= gb:AK103156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0485011/11snoRNA binding domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04770OsAffx.29313.1.S1_at1/117+2117708..2120085transposon protein, putative, Mutator sub-class
LOC_Os07g04780NANA7+2121062..2121824hypothetical protein
LOC_Os07g04790OsAffx.10267.1.S1_at11/117+2123108..2123884F-box domain containing protein
LOC_Os07g04800OsAffx.28273.2.S1_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.2.S1_s_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.1.S1_at4/117+2124790..2125299hypothetical protein
LOC_Os07g04810Os.54639.1.S1_at11/117+2126764..2128349Protein kinase domain containing protein, expressed
LOC_Os07g04820Os.52735.1.S1_at10/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04820OsAffx.24030.1.S1_x_at3/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04830OsAffx.16088.1.S1_x_at11/117+2133407..2134336hypothetical protein
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
LOC_Os07g04860Os.47348.1.A1_at11/117+2139036..2142269transposon protein, putative, unclassified, expressed
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed
LOC_Os07g04880OsAffx.28274.1.S1_at11/117+2154204..2155852hypothetical protein
LOC_Os07g04890OsAffx.28275.1.S1_at10/117+2157853..2158588hypothetical protein
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17862.1.S1_at--241--5651Chr07:2149576..2149600 (25 bp)
GACAGGCAGGTCGTTGTACCAGAAC
LOC_Os07g04850
Os.17862.1.S1_at--709--4871Chr07:2149654..2149678 (25 bp)
GCTATCACACAAGCCCTGAAGTTCT
LOC_Os07g04850
Os.17862.1.S1_at--119--1231Chr07:2149673..2149697 (25 bp)
AGTTCTTCCCTGTTCCTGTTAGGAT
LOC_Os07g04850
Os.17862.1.S1_at--963--6191Chr07:2149714..2149738 (25 bp)
GAGGAATGCTCTGATGCACATGTCA
LOC_Os07g04850
Os.17862.1.S1_at--791--6751Chr07:2149789..2149813 (25 bp)
GTTACCGTTGCTGGGATAGTTTTCA
LOC_Os07g04850
Os.17862.1.S1_at--281--9711Chr07:2149811..2149835 (25 bp)
TCAACCAGGGAGACAGCCTTGGCAT
LOC_Os07g04850
Os.17862.1.S1_at--129--7631Chr07:2149952..2149976 (25 bp)
GGGAAAGCTGATTCGATGCCACGCC
LOC_Os07g04850
Os.17862.1.S1_at--429--591Chr07:2149967..2149991 (25 bp)
ATGCCACGCCATAGCGATTCATCAG
LOC_Os07g04850
Os.17862.1.S1_at--45--10452Chr07:2150010..2150034 (25 bp)
TTAGGTAGCTCTTATCTTTCAGGAA
LOC_Os07g04850
Os.17862.1.S1_at--954--10591Chr07:2150036..2150060 (25 bp)
TTCTCCATCATCTCCTGAAATGTCA
LOC_Os07g04850
Os.17862.1.S1_at--1003--6311Chr07:2150067..2150091 (25 bp)
GATGAAATCCCATCTCGGATGCCAT
LOC_Os07g04850
Target Sequence 
GACAGGCAGGTCGTTGTACCAGAACATCAGGATTTGCTGCATGTTTTCATCCAGCATTAAACCATGTGAATCATGCAGGC
TATCACACAAGCCCTGAAGTTCTTCCCTGTTCCTGTTAGGATTGGCATAAAGGACATGGAGGAATGCTCTGATGCACATG
TCAGTGGAGTTGGAGGCACATTTTGACAGTATGGATCTAATCACTTCATCCAGGTTACCGTTGCTGGGATAGTTTTCAAC
CAGGGAGACAGCCTTGGCATGGAAGAAGTCGATGAGATGATCCAGAGGAGGGAAGACTCTGTCATGTGGTGAACAGGAGT
AGGCTACGGCAGGTGACCGGGTTGTCAGCAGGATGGCACTGTGAGCCGTGTTGCCGGGGAAAGCTGATTCGATGCCACGC
CATAGCGATTCATCAGGAACATCATCAAGAACAATTAGGTAGCTCTTATCTTTCAGGAAGTTCTCCATCATCTCCTGAAA
TGTCATTCCTTGATGAAATCCCATCTCGGATGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis