Browse Element(s) Details


Os.17865.1.S1_at

Description gb:AK105773.1
DB_XREF= gi:32990982
TID=Os.17865.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OSJNBa0026L12.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F01, full insert sequence.
FL= gb:AK121651.1 gb:AK105773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3698011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36950Os.11620.1.S1_a_at11/1110+19471354..19474102IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os10g36960Os.46643.1.S1_x_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960Os.46643.1.S1_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.2.S1_x_at4/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.3.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.1.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.4.S1_x_at1/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36966OsAffx.7975.1.S1_at11/1110+19476908..19478454hypothetical protein
LOC_Os10g36972NANA10+19479494..19479922hypothetical protein
LOC_Os10g36980Os.17865.1.S1_at11/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.2.S1_x_at3/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.4.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980Os.46643.1.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.3.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36984NANA10+19482711..19484390hypothetical protein
LOC_Os10g36990Os.35344.3.S1_x_at11/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990Os.35344.18.S1_x_at10/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990OsAffx.22940.5.S1_x_at2/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g37010OsAffx.13460.1.S1_at2/1110+19493697..19495523hypothetical protein
LOC_Os10g37020OsAffx.30695.4.S1_at10/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.4.S1_x_at8/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.2.S1_x_at3/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.3.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020Os.46643.1.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37034Os.46592.1.S1_at11/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46592.2.S1_x_at9/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.2.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_at4/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.3.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46643.1.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.1.S1_x_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.51397.1.S1_at1/1110+19499596..19503060Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17865.1.S1_at--343--6691Chr10:19482004..19482028 (25 bp)
GTTGCCATGCTACACCTGGAGTATT
LOC_Os10g36980
Os.17865.1.S1_at--434--2171Chr10:19482015..19482039 (25 bp)
ACACCTGGAGTATTTCGTGGCGAAT
LOC_Os10g36980
Os.17865.1.S1_at--1139--7511Chr10:19482082..19482106 (25 bp)
GTGGACTTGACCGAGAAGAATGAGT
LOC_Os10g36980
Os.17865.1.S1_at--821--1451Chr10:19482095..19482119 (25 bp)
AGAAGAATGAGTTCACCACTGTGAT
LOC_Os10g36980
Os.17865.1.S1_at--618--9671Chr10:19482107..19482131 (25 bp)
TCACCACTGTGATGGCAAAGCCGCT
LOC_Os10g36980
Os.17865.1.S1_at--687--5651Chr10:19482219..19482243 (25 bp)
GACATGGTCACTAACAAGTGGGTCC
LOC_Os10g36980
Os.17865.1.S1_at--472--2011Chr10:19482228..19482252 (25 bp)
ACTAACAAGTGGGTCCGCGAGTGGT
LOC_Os10g36980
Os.17865.1.S1_at--345--1331Chr10:19482295..19482319 (25 bp)
AGAGGATCCCAATCCCTAAGACATG
LOC_Os10g36980
Os.17865.1.S1_at--15--3051Chr10:19482305..19482329 (25 bp)
AATCCCTAAGACATGCATGCGCATC
LOC_Os10g36980
Os.17865.1.S1_at--323--651Chr10:19482317..19482341 (25 bp)
ATGCATGCGCATCTTTCTACCATAT
LOC_Os10g36980
Os.17865.1.S1_at--814--4571Chr10:19482323..19482347 (25 bp)
GCGCATCTTTCTACCATATGATTAA
LOC_Os10g36980
Target Sequence 
GTTGCCATGCTACACCTGGAGTATTTCGTGGCGAATTTGGTGAAGGAGTTCGAGTGGAAGGAGGTGGCCGGCGACGAGGT
GGACTTGACCGAGAAGAATGAGTTCACCACTGTGATGGCAAAGCCGCTCCGNGCTCANCTTGTTAAACGGGCTTAGTTTT
TNTTTTTTTGAGTGTCTNTAANACGGAACNNGATCNNNTNANNNNAANNNNNNCGTGACATGGTCACTAACAAGTGGGTC
CGCGAGTGGTGGGGTTCACATGTCAGTCACCACGTCTCTCTGACTTCACGTCAGAGGATCCCAATCCCTAAGACATGCAT
GCGCATCTTTCTACCATATGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis