Browse Element(s) Details


Os.18257.1.S1_at

Description gb:AK120944.1
DB_XREF= gi:37990567
TID=Os.18257.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.18257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full insert sequence.
FL= gb:AK120944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1084011/11seed imbibition protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10780Os.52422.1.S1_s_at11/117+5863037..5864374Remorin, C-terminal region family protein, expressed
LOC_Os07g10790OsAffx.28394.1.S1_at11/117+5871641..5872185hypothetical protein
LOC_Os07g10800NANA7+5873626..5874132hypothetical protein
LOC_Os07g10810Os.17465.2.A1_at4/117+5875090..5878100hypothetical protein
LOC_Os07g10810OsAffx.29276.1.S1_at1/117+5875090..5878100hypothetical protein
LOC_Os07g10820Os.47857.1.S1_at11/117+5878489..5882657transporter, putative, expressed
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18257.1.S1_at--358--7731Chr07:5889182..5889206 (25 bp)
GGTGGAACCTGGAGATTCACGTCTA
LOC_Os07g10840
Os.18257.1.S1_at--549--131Chr07:5889168..5889192 (25 bp)
ATTCACGTCTAGGATGCTGCTGCTG
LOC_Os07g10840
Os.18257.1.S1_at--757--9191Chr07:5889145..5889169 (25 bp)
TGCCACGTGGCGGTGCGATCTTTGC
LOC_Os07g10840
Os.18257.1.S1_at--292--6411Chr07:5889129..5889153 (25 bp)
GATCTTTGCCCTCTGGTGTTCGTGG
LOC_Os07g10840
Os.18257.1.S1_at--574--7411Chr07:5889114..5889138 (25 bp)
GTGTTCGTGGCTGAGACATTCCCAG
LOC_Os07g10840
Os.18257.1.S1_at--93--5991Chr07:5889102..5889126 (25 bp)
GAGACATTCCCAGCCGTTGGATCAT
LOC_Os07g10840
Os.18257.1.S1_at--910--3372Chr08:2814353..2814430 (24 bp)
CAGCCGTTGGATCATTGCCATTGAT
NONE
Os.18257.1.S1_at--1006--4431Chr07:5889076..5889100 (25 bp)
GCCATTGATGGTTTGCAGCAGAGAT
LOC_Os07g10840
Os.18257.1.S1_at--1028--10811Chr07:5889032..5889056 (25 bp)
TTGTGATGTGCCCTCTTACGACTTG
LOC_Os07g10840
Os.18257.1.S1_at--681--3591Chr07:5889020..5889044 (25 bp)
CTCTTACGACTTGCAACGCGGTAGA
LOC_Os07g10840
Os.18257.1.S1_at--701--6131Chr07:5888997..5889021 (25 bp)
GAGGGAGTATGCTTTGCTACATCTA
LOC_Os07g10840
Target Sequence 
GGTGGAACCTGGAGATTCACGTCTAGGATGCTGCTGCTGCCACGTGGCGGTGCGATCTTTGCCCTCTGGTGTTCGTGGCT
GAGACATTCCCAGCCGTTGGATCATTGCCATTGATGGTTTGCAGCAGAGATGGACGGACCGATGGAGAGATTGTGATGTG
CCCTCTTACGACTTGCAACGCGGTAGAGGGAGTATGCTTTGCTACATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis