Browse Element(s) Details


Os.18847.1.S1_at

Description gb:BM418832
DB_XREF= gi:18385633
DB_XREF=R005D07
CLONE=R005D07
TID=Os.18847.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18847 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g631806/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63150Os.42422.1.S1_at11/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.3.S1_x_at6/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.22659.1.A1_at2/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.1.S1_x_at1/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63160Os.30620.1.S1_at11/111+36933384..36934984Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63170Os.38395.4.S1_x_at11/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.3.S1_x_at10/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.1.S1_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.2.S1_x_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18847.1.S1_at--59--4831Chr01:36947965..36947989 (25 bp)
GCTAAGGTTGCTCTCTGAAAGTTCA
LOC_Os01g63180
Os.18847.1.S1_at--672--5571Chr01:36947981..36948006 (25 bp)
GAAAGTTCAGTTCTGCCTTCTTCGA
LOC_Os01g63180
Os.18847.1.S1_at--310--9191Chr01:36947996..36948019 (24 bp)
TGCCTTCTTCGATCCGGTGAAAGAT
LOC_Os01g63180
Os.18847.1.S1_at--140--4871NONE
GCTTCGGACGACACGGGAGATGACC
NONE
Os.18847.1.S1_at--239--8051NONE
GGAGATGACCATTAAGTTCCATACA
NONE
Os.18847.1.S1_at--103--5191Chr01:36948138..36948162 (25 bp)
GCAAGTGTATTTTATCCGTAGAGTT
LOC_Os01g63180
Os.18847.1.S1_at--762--6811Chr01:36948160..36948184 (25 bp)
GTTTTACCTTCTTTTCTGTGTTGAT
LOC_Os01g63180
Os.18847.1.S1_at--83--211Chr01:36948185..36948208 (24 bp)
ATTTGATCGTTCCTGGATTCTGCAC
LOC_Os01g63180
Os.18847.1.S1_at--356--6571NONE
GATTCTGCACTTCTGCACGTTAACA
NONE
Os.18847.1.S1_at--884--3511NONE
CATGTACGTGATTGTGTTCCTAGGC
NONE
Os.18847.1.S1_at--1038--6691NONE
GTTCCTAGGCAAATCACGTACATGA
NONE
Target Sequence 
GCTAAGGTTGCTCTCTGAAAGTTCAGTTCTGCCTTCTTCGATCCGGTGAAAGATGGGCTGCCATCATGATGTAAAAGGCT
TCGGACGACACGGGAGATGACCATTAAGTTCCATACACATCTTGGTAATCTTTGAAGAGATACTTGTTTCGACAATTCGA
TTCCGATTGATTGCAAGTGTATTTTATCCGTAGAGTTTTACCTTCTTTTCTGTGTTGATATTTGATCGTTCCTGGATTCT
GCACTTCTGCACGTTAACATGTAAATAAGAGGGGTCAGAATCAAGAGTAAATAACAACAATCACAGAAAAGCAGAAATTC
ATGTACGTGATTGTGTTCCTAGGCAAATCACGTACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis