Browse Element(s) Details


Os.20775.1.S1_at

Description gb:AK059036.1
DB_XREF= gi:32969054
TID=Os.20775.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.20775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C10, full insert sequence.
FL= gb:AK059036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3251011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32450Os.52421.1.S1_at11/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.17984.1.S1_at10/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450Os.45957.4.S1_x_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.29179.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.26538.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32470OsAffx.30119.1.S1_at11/119+19384217..19386594auxin-responsive family protein, putative, expressed
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g32520OsAffx.30120.3.S1_s_at11/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32520Os.8861.1.S1_x_at7/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20775.1.S1_at--1003--2711Chr09:19406532..19406556 (25 bp)
AAGCAGATTTTTTCCAGTCATTTGG
LOC_Os09g32510
Os.20775.1.S1_at--748--1151Chr09:19406517..19406541 (25 bp)
AGTCATTTGGTCTGGGAGCCATGGA
LOC_Os09g32510
Os.20775.1.S1_at--93--6171Chr09:19406266..19406290 (25 bp)
GAGGATGCGGTTTCTGCACCGAATT
LOC_Os09g32510
Os.20775.1.S1_at--704--10291Chr09:19406158..19406267 (25 bp)
TTTCGATGGTCAGTTGCAAGCAGCA
LOC_Os09g32510
Os.20775.1.S1_at--764--1591Chr09:19406046..19406070 (25 bp)
AGCTCCTAAGCTAACTGTTCTTCGA
LOC_Os09g32510
Os.20775.1.S1_at--325--10071Chr09:19406017..19406041 (25 bp)
TAGGCCCGAGGGAACTGATTCATTT
LOC_Os09g32510
Os.20775.1.S1_at--398--10331Chr09:19405993..19406017 (25 bp)
TTTCATATGCTGGATGTACGGCTAC
LOC_Os09g32510
Os.20775.1.S1_at--907--6991Chr09:19405978..19406002 (25 bp)
GTACGGCTACTTGATTCTTCTCATA
LOC_Os09g32510
Os.20775.1.S1_at--701--3111Chr09:19405898..19405922 (25 bp)
AATATTACAAGCACCATCTCTCTTC
LOC_Os09g32510
Os.20775.1.S1_at--1034--451Chr09:19405883..19405907 (25 bp)
ATCTCTCTTCCAGTATGTACGAGCC
LOC_Os09g32510
Os.20775.1.S1_at--326--3091Chr09:19405851..19405875 (25 bp)
AATAGCCTGGTATTGCCATGATACA
LOC_Os09g32510
Target Sequence 
AAGCAGATTTTTTCCAGTCATTTGGTCTGGGAGCCATGGAAAACCAATGTAGCCTAGATCTGGCAAACACAGCTCTACCC
CACACAGGGAGCACACAGTATGCTTTTCAGAAGCAGCAAAGGGATCTCTGGGAGGATAATACTTTCCNGTATAACGACGA
ACNAAGCCAGGAGGATGCGGTTTCTGCACCGAATTTCGATGGTCAGTTGCAAGCAGCAGATCACACAGAGATCGAGTTCT
AGATGATCANTGATAACAGCCAATGATTTTTGTACATAGAAAGCATGAAACCAGTTGCAAAGTGAAGCTCCTAAGCTAAC
TGTTCTTCGAAATTTAGGCCCGAGGGAACTGATTCATTTTTCATATGCTGGATGTACGGCTACTTGATTCTTCTCATATT
TGTGAGACAAATATGATCTACAAAATAGTAGGTTATGTACTAGATATGGTGCAAATATTACAAGCACCATCTCTCTTCCA
GTATGTACGAGCCGGCTGGTAATAGCCTGGTATTGCCATGATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis