Browse Element(s) Details


Os.2239.1.S1_at

Description gb:AK062506.1
DB_XREF= gi:32972524
TID=Os.2239.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-B07, full insert sequence.
FL= gb:AK062506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0205010/11Nonspecific lipid-transfer protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2239.1.S1_at--349--4771Chr03:630892..630916 (25 bp)
GCTGCTTCTGCCAGTTCGCCAAGGA
LOC_Os03g02050
Os.2239.1.S1_at--850--4571Chr03:630864..630888 (25 bp)
GCGCTACGGGCGCTACGTCAACAGC
LOC_Os03g02050
Os.2239.1.S1_at--554--6711Chr03:630732..630756 (25 bp)
GTTCGTAGTATTGTCTTGGCGTCAT
LOC_Os03g02050
Os.2239.1.S1_at--124--10811Chr03:630722..630746 (25 bp)
TTGTCTTGGCGTCATCTCGTCACGA
LOC_Os03g02050
Os.2239.1.S1_at--850--9391Chr03:630706..630730 (25 bp)
TCGTCACGACGCGTATATGCATGCG
LOC_Os03g02050
Os.2239.1.S1_at--675--10431Chr03:630645..630669 (25 bp)
TTATGTGCTTGGGTGGTCAGTTCGC
LOC_Os03g02050
Os.2239.1.S1_at--635--7111Chr03:630630..630654 (25 bp)
GTCAGTTCGCGGTTGGCTGCAGCCT
LOC_Os03g02050
Os.2239.1.S1_at--87--1691Chr03:630610..630634 (25 bp)
AGCCTGCAGCTGACTTGCCTATGTA
LOC_Os03g02050
Os.2239.1.S1_at--463--1611Chr03:630603..630627 (25 bp)
AGCTGACTTGCCTATGTATACATGT
LOC_Os03g02050
Os.2239.1.S1_at--932--3691Chr03:630592..630616 (25 bp)
CTATGTATACATGTCGTCGTGTTAT
LOC_Os03g02050
Os.2239.1.S1_at--947--4011Chr03:630544..630565 (22 bp)
CGATTCCGATCGATATTCTCAAAAA
NONE
Target Sequence 
GCTGCTTCTGCCAGTTCGCCAAGGACCCGCGCTACGGGCGCTACGTCAACAGCCCCAACGCCCGCAAGGCCGTCTCCTCC
TGCGGCATCGCCCTCCCCACCTGCCACTGATCCATCCATCCATCGTCTCCTACTCTTTTATTTTGTGATGTGGTGTACGT
GTTCGTAGTATTGTCTTGGCGTCATCTCGTCACGACGCGTATATGCATGCGCNAGTGCGGCTTTTGAATAAAAGGGGATC
GACCGATNTGTTATGTGCTTGGGTGGTCAGTTCGCGGTTGGCTGCAGCCTGCAGCTGACTTGCCTATGTATACATGTCGT
CGTGTTATACANGATATAAACTCGATCGATCGATCCGATTCCGATCGATATTCTCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis