Browse Element(s) Details


Os.22772.1.S1_at

Description gb:AK101747.1
DB_XREF= gi:32986956
TID=Os.22772.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0710E05.5 (P0710E05.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061P16, full insert sequence.
FL= gb:AK101747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g094205/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09400OsAffx.32051.1.S1_x_at1/111+4783280..4784044transposon protein, putative, unclassified
LOC_Os01g09410Os.9853.2.S1_x_at10/111+4788639..4791742expressed protein
LOC_Os01g09410Os.9859.4.S1_x_at2/111+4788639..4791742expressed protein
LOC_Os01g09420Os.9850.1.S1_s_at11/111+4792957..4795256expressed protein
LOC_Os01g09420Os.22772.1.S1_at5/111+4792957..4795256expressed protein
LOC_Os01g09430Os.1465.1.S1_at9/111+4797049..4798979SyrP, putative, expressed
LOC_Os01g09440OsAffx.24130.1.S1_x_at6/111+4804787..4805302hypothetical protein
LOC_Os01g09450Os.19952.1.S1_at11/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09450OsAffx.26801.1.S1_x_at1/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09460Os.33758.2.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.2.S1_x_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.1.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22772.1.S1_at--397--10871Chr01:4793176..4793200 (25 bp)
TTGGATGCATCAAAACGACCAGGAT
LOC_Os01g09420
Os.22772.1.S1_at--929--7371Chr01:4793151..4793175 (25 bp)
GTGAGCTCCTGCATGTTAGGCTAAA
LOC_Os01g09420
Os.22772.1.S1_at--1150--3471Chr01:4793017..4793041 (25 bp)
CAGGATTATGGATGGATTGTATGCT
LOC_Os01g09420
Os.22772.1.S1_at--200--8771Chr01:4793000..4793024 (25 bp)
TGTATGCTATATTATTTTGTCTCGC
LOC_Os01g09420
Os.22772.1.S1_at--653--10211Chr01:4792988..4793012 (25 bp)
TATTTTGTCTCGCATGTCCATATTA
LOC_Os01g09420
Os.22772.1.S1_at--645--8811Chr01:4792951..4792975 (25 bp)
TGTTGCTGTGGCACTGCTCAACCTG
NONE
Os.22772.1.S1_at--397--8251Chr01:4792942..4792966 (25 bp)
GGCACTGCTCAACCTGAGTACTATA
NONE
Os.22772.1.S1_at--238--6091NONE
GAGTACTATACAAACGAGCAGGATT
NONE
Os.22772.1.S1_at--399--5931Chr01:4791871..4791895 (25 bp)
GAGCAGGATTTGCATATGCCAGCCA
NONE
Os.22772.1.S1_at--948--251Chr01:4791858..4791882 (25 bp)
ATATGCCAGCCAAATCAGATTGCCA
NONE
Os.22772.1.S1_at--25--4411Chr01:4791850..4791874 (25 bp)
GCCAAATCAGATTGCCATGCAGTTA
NONE
Target Sequence 
TTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGGCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGA
CTATGACACCTCGTAGTTGGCAGACTATGACACCTCGTAGTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAANC
AGGATTATGGATGGATTGTATGCTATATTATTTTGTCTCGCATGTCCATATTATTTTTATATTTTTGTTGCTGTGGCACT
GCTCAACCTGAGTACTATACAAACGAGCAGGATTTGCATATGCCAGCCAAATCAGATTGCCATGCAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis