Browse Element(s) Details


Os.23472.1.A1_at

Description gb:AK070632.1
DB_XREF= gi:32980656
TID=Os.23472.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) beta-N-acetylhexosaminidase -like protein (B1078G07.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055K01, full insert sequence.
FL= gb:AK070632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6670011/11Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein
LOC_Os01g66660OsAffx.2422.1.S1_at11/111+39045340..39046228hypothetical protein
LOC_Os01g66670OsAffx.11759.1.S1_at11/111+39050196..39051014hypothetical protein
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66720Os.8821.1.S1_at11/111+39079464..39081799NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g66730OsAffx.29329.2.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730OsAffx.29329.1.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.3.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.2.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66750OsAffx.2423.1.S1_at8/111+39094042..39095129hypothetical protein
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563molecular_functionbeta-N-acetylhexosaminidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23472.1.A1_at--1032--8051Chr01:39067081..39067105 (25 bp)
GGCAATAGGATATTCATAGCAAGAT
LOC_Os01g66700
Os.23472.1.A1_at--965--3671Chr01:39067031..39067055 (25 bp)
CTTTGTTCAGGATTCACTTTTACCA
LOC_Os01g66700
Os.23472.1.A1_at--45--8791Chr01:39067028..39067052 (25 bp)
TGTTCAGGATTCACTTTTACCAAGT
LOC_Os01g66700
Os.23472.1.A1_at--24--10471Chr01:39067012..39067036 (25 bp)
TTACCAAGTGTAACATCAGCATCTC
LOC_Os01g66700
Os.23472.1.A1_at--622--7031Chr01:39067003..39067027 (25 bp)
GTAACATCAGCATCTCAATATTCAG
LOC_Os01g66700
Os.23472.1.A1_at--677--10211Chr01:39066985..39067009 (25 bp)
TATTCAGATAGTTCAGTGGTTAGAC
LOC_Os01g66700
Os.23472.1.A1_at--1020--3451Chr01:39066972..39066996 (25 bp)
CAGTGGTTAGACTATTGAATATCCT
LOC_Os01g66700
Os.23472.1.A1_at--1031--5671Chr01:39066963..39066987 (25 bp)
GACTATTGAATATCCTAAGTTAACC
LOC_Os01g66700
Os.23472.1.A1_at--462--9231Chr01:39066951..39066975 (25 bp)
TCCTAAGTTAACCTATTATCCCTAT
LOC_Os01g66700
Os.23472.1.A1_at--686--10651Chr01:39066924..39066948 (25 bp)
TTCCCCTCTTCCAATTTTCAACAGA
LOC_Os01g66700
Os.23472.1.A1_at--1054--4191Chr01:39066922..39066946 (25 bp)
CCCCTCTTCCAATTTTCAACAGAAT
LOC_Os01g66700
Target Sequence 
GGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAANCTTTGTTCAGGATTCACTTTTACCAAGTGT
AACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTATTTTTC
CCCTCTTCCAATTTTCAACAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23472.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis