Browse Element(s) Details


Os.24864.3.S1_at

Description gb:AK059825.1
DB_XREF= gi:32969843
TID=Os.24864.3
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F04, full insert sequence.
FL= gb:AK059825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1031011/11Acid phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10270OsAffx.29755.1.S1_s_at9/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.4.S1_x_at5/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.3.S1_x_at5/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.2.S1_x_at4/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.5.S1_x_at2/115+5581558..5588945hypothetical protein
LOC_Os05g10280OsAffx.30941.5.S1_x_at11/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.9.S1_x_at7/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.1.S1_x_at5/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.2.S1_x_at5/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10290OsAffx.26809.1.S1_at11/115+5600025..5600425hypothetical protein
LOC_Os05g10300NANA5+5602517..5603188hypothetical protein
LOC_Os05g10310Os.24864.1.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.3.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.2.S1_at9/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10320OsAffx.26810.1.S1_at11/115+5615175..5615447hypothetical protein
LOC_Os05g10330OsAffx.26811.1.S1_at10/115+5617833..5620429HAD superfamily phosphatase containing protein
LOC_Os05g10340NANA5+5623293..5626028transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10350OsAffx.4292.1.S1_at11/115+5628120..5628389hypothetical protein
LOC_Os05g10360OsAffx.14360.2.A1_at1/115+5629796..5630023hypothetical protein
LOC_Os05g10370Os.51184.1.S1_at11/115+5631984..5634088Acid phosphatase, putative, expressed
LOC_Os05g10380OsAffx.26812.2.S1_x_at11/115+5636801..5639210hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009625biological_processresponse to insect
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010149biological_processsenescence (sensu Magnoliophyta)
GO:0042538biological_processhyperosmotic salinity response
GO:0046688biological_processresponse to copper ion
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24864.3.S1_at--429--7371Chr05:5608531..5608555 (25 bp)
GTGACTGTACTACCGGCTGCTTGAG
LOC_Os05g10310
Os.24864.3.S1_at--413--9811Chr05:5608484..5608508 (25 bp)
TAACAGGCCGCACCGAAGACCAAAG
LOC_Os05g10310
Os.24864.3.S1_at--828--3791Chr05:5608423..5608447 (25 bp)
CTCCGGGTGGGAGAAACTGCTGCTC
LOC_Os05g10310
Os.24864.3.S1_at--79--5551Chr05:5608411..5608435 (25 bp)
GAAACTGCTGCTCAAGCCAGCGGTG
LOC_Os05g10310
Os.24864.3.S1_at--1005--4251Chr05:5608233..5608257 (25 bp)
CCTGACCCCTTATACTACATTGGAT
LOC_Os05g10310
Os.24864.3.S1_at--950--3931Chr05:5608190..5608214 (25 bp)
CGGCGGCCATTGCTAGTTCTAATAA
LOC_Os05g10310
Os.24864.3.S1_at--291--6731Chr05:5608175..5608199 (25 bp)
GTTCTAATAAGCTTGCGCGCCATAA
LOC_Os05g10310
Os.24864.3.S1_at--1126--4552Chr12:2921175..2921202 (24 bp)
GCGCCATAAATCTAGTCACGTTCAC
NONE
Os.24864.3.S1_at--21--7111Chr05:5608145..5608169 (25 bp)
GTCACGTTCACTTCATGATGTTGCT
LOC_Os05g10310
Os.24864.3.S1_at--958--8031Chr05:5608048..5608072 (25 bp)
GGAGTATCATGGTTCCAGAGCAGTA
LOC_Os05g10310
Os.24864.3.S1_at--903--3591Chr05:5607999..5608023 (25 bp)
CTTGTTCTGTTTATCTCCGTTTAAT
LOC_Os05g10310
Target Sequence 
GTGACTGTACTACCGGCTGCTTGAGCTCGGCGTCAAGCCGGTGTTCCTAACAGGCCGCACCGAAGACCAAAGGACCATCA
CCGTCACGAACCTCCACCGACAGGGATTCTCCGGGTGGGAGAAACTGCTGCTCAAGCCAGCGGTGCACGCCACCGGTGAG
CTCCAAGGGTCCGCCGTTGAATACAAGTCCGGCGAGCGGCAGAAGCTGCAGGACGCTGGCTTCATNATCGTCGGGAACAT
CGGTGACCAGTGGAGTGACATCCTCGGCGCGCCGGAGGGCGCCCGCACCTTCAAGCTGCCTGACCCCTTATACTACATTG
GATAGGTTNCCGCGCTCGCGCCGGCGGCCATTGCTAGTTCTAATAAGCTTGCGCGCCATAAATCTAGTCACGTTCACTTC
ATGATGTTGCTTGTGATGAACTGCTTCTAATAATCGCCATNTACTAGCTGTTGGTAGATGATATTTCTAATAAAACGTGT
GTTGGAGTATCATGGTTCCAGAGCAGTACAAGAATTTATCTATGTGAGCAAACTTGTTCTGTTTATCTCCGTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24864.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis