Browse Element(s) Details


Os.25054.1.S1_at

Description gb:AK072747.1
DB_XREF= gi:32982770
TID=Os.25054.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023137P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023137P20, full insert sequence.
FL= gb:AK072747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5621011/11Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56170Os.52576.1.S1_at11/114+33269440..33273790LIGULELESS1 protein, putative, expressed
LOC_Os04g56180Os.57372.1.S1_at11/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56180Os.50838.1.A1_at6/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56190OsAffx.14433.1.S1_at11/114+33292622..33293447hypothetical protein
LOC_Os04g56200OsAffx.26629.1.S1_at11/114+33296749..33297386hypothetical protein
LOC_Os04g56210Os.25054.1.S1_at11/114+33298158..33300981Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed
LOC_Os04g56220OsAffx.26630.1.S1_at10/114+33302307..33303570hypothetical protein
LOC_Os04g56220OsAffx.22651.3.A1_x_at1/114+33302307..33303570hypothetical protein
LOC_Os04g56230Os.22651.1.S1_at10/114+33305663..33309387Farnesyl pyrophosphate synthetase 2, putative, expressed
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0045337biological_processfarnesyl diphosphate biosynthesis
GO:0004161molecular_functiondimethylallyltranstransferase activity
GO:0004337molecular_functiongeranyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25054.1.S1_at--480--5291Chr04:33299411..33299431 (21 bp)
GAAGGCTACCGTCGCATTGTTAAGT
LOC_Os04g56210
Os.25054.1.S1_at--1161--2211Chr04:33299386..33299410 (25 bp)
ACAAGACAGCGTACTACTCCTTTTA
LOC_Os04g56210
Os.25054.1.S1_at--328--10331Chr04:33299001..33299389 (25 bp)
TTTACCTTCCTGTGGCCAATGCTTT
LOC_Os04g56210
Os.25054.1.S1_at--622--3011Chr04:33298984..33299008 (25 bp)
AATGCTTTGCTCTTATCTGGCGCAA
LOC_Os04g56210
Os.25054.1.S1_at--592--2071Chr04:33298818..33298842 (25 bp)
ACTTGGACTGTTTTGCTGACCCTAA
LOC_Os04g56210
Os.25054.1.S1_at--534--9751Chr04:33298670..33298694 (25 bp)
TAATAGTACAGGCTCTTGGTCATGC
LOC_Os04g56210
Os.25054.1.S1_at--981--5291Chr04:33298529..33298553 (25 bp)
GAAGGATTCAAGTTCTGTTTCCGAA
LOC_Os04g56210
Os.25054.1.S1_at--1076--9831Chr04:33298503..33298527 (25 bp)
TAAAGAGGACTTACGCGGCGCTTGA
LOC_Os04g56210
Os.25054.1.S1_at--983--6691Chr04:33298351..33298375 (25 bp)
GTTCGAACGTCGATGCTACAACCAC
LOC_Os04g56210
Os.25054.1.S1_at--756--8591Chr04:33298325..33298349 (25 bp)
TGGTCACCTCTATCGAAGCTCAGAA
LOC_Os04g56210
Os.25054.1.S1_at--757--8831Chr04:33298183..33298207 (25 bp)
TGATCGAAATCTATCTCCCCATAAG
LOC_Os04g56210
Target Sequence 
GAAGGCTACCGTCGCATTGTTAAGTACAAGACAGCGTACTACTCCTTTTACCTTCCTGTGGCCAATGCTTTGCTCTTATC
TGGCGCAAAACTTGAAGACTTCAGTGGTCTAAAGGATATACTTATTGAAATGGGCATATATTTTCAGATACAGGATGACT
ACTTGGACTGTTTTGCTGACCCTAACACCATAGGCAAGATTGGAACTGACATCGAAGATCATAAGTGTTCCTGGTTAATA
GTACAGGCTCTTGGTCATGCNGACAACAATCAAATAGAAGTACTACATAGGAACTATGGCAAGAAGGATTCAAGTTCTGT
TTCCGAAGTAAAGAGGACTTACGCGGCGCTTGATTTGAAAGATATCTTCTCCGAGTTCGAACGTCGATGCTACAACCACC
TGGTCACCTCTATCGAAGCTCAGAAGGATCATGCAGCACGGGAGATCCTGANATCATTTCTGAAGAAAATTCATCAAAGG
AAGAAGTAGTTAATAAGTTATAACAATTATGACCTGTATGAGCTTATGGTAACATTTAAAAATGATCGAAATCTATCTCC
CCATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis