Browse Element(s) Details


Os.25193.1.S1_at

Description gb:NM_186748.1
DB_XREF= gi:34900581
TID=Os.25193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0565A07.24 (P0565A07.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0565A07.24 (P0565A07.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1345010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13400OsAffx.22421.2.S1_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13400OsAffx.16244.1.S1_x_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13420OsAffx.22947.2.S1_x_at11/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.1.S1_x_at7/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.3.S1_x_at5/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.5.S1_x_at3/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13430Os.27435.1.S1_x_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.27435.1.S1_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46985.1.S1_x_at2/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_at1/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25193.1.S1_at--853--7191Chr07:7709253..7709277 (25 bp)
GTCGTCGCGCAGGTCATCGACTACT
LOC_Os07g13450
Os.25193.1.S1_at--391--9371Chr07:7709237..7709261 (25 bp)
TCGACTACTCGTCCATGAATCGCGA
LOC_Os07g13450
Os.25193.1.S1_at--345--9911Chr07:7709232..7709256 (25 bp)
TACTCGTCCATGAATCGCGACCATA
LOC_Os07g13450
Os.25193.1.S1_at--838--5251Chr07:7709221..7709245 (25 bp)
GAATCGCGACCATATTCCTGGAACA
LOC_Os07g13450
Os.25193.1.S1_at--58--231Chr07:7709210..7709234 (25 bp)
ATATTCCTGGAACACCGCAGCTCAA
LOC_Os07g13450
Os.25193.1.S1_at--445--3931Chr07:7709179..7709203 (25 bp)
CGGCGACATCGCTAACAAATACACG
LOC_Os07g13450
Os.25193.1.S1_at--639--3091Chr07:7708963..7709186 (25 bp)
AATACACGCGTGGATTTGCAGCTTT
LOC_Os07g13450
Os.25193.1.S1_at--350--211NONE
ATTTGCAGCTTTGGCAAAATTTGCC
NONE
Os.25193.1.S1_at--813--5131Chr07:7708937..7708961 (25 bp)
GCAAAATTTGCCATGATCTTTGCTA
LOC_Os07g13450
Os.25193.1.S1_at--644--6411Chr07:7708923..7708947 (25 bp)
GATCTTTGCTAGAAAGCATTGTAAG
LOC_Os07g13450
Os.25193.1.S1_at--341--3611Chr07:7708907..7708931 (25 bp)
CATTGTAAGAATGTGGATCTGTTGA
LOC_Os07g13450
Target Sequence 
GTCGTCGCGCAGGTCATCGACTACTCGTCCATGAATCGCGACCATATTCCTGGAACACCGCAGCTCAACCACCCCGGCGA
CATCGCTAACAAATACACGCGTGGATTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAGCATTGTAAGAATG
TGGATCTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis