Browse Element(s) Details


Os.25477.1.S1_at

Description gb:AK109617.1
DB_XREF= gi:32994826
TID=Os.25477.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H03, full insert sequence.
FL= gb:AK109617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3544011/11Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35390OsAffx.22848.4.S1_at2/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.4.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.3.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35400Os.54759.1.S1_at10/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35400OsAffx.24785.1.S1_x_at1/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35410Os.13562.1.S1_at11/115+20956225..20961695Potassium channel AKT2/3, putative, expressed
LOC_Os05g35420OsAffx.14975.1.S1_at11/115+20964764..20965114hypothetical protein
LOC_Os05g35430Os.32285.1.S1_at2/115+20965255..20965815hypothetical protein
LOC_Os05g35440Os.25477.1.S1_at11/115+20966598..20971516Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein
LOC_Os05g35450OsAffx.14976.1.S1_at11/115+20979895..20980137hypothetical protein
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006544biological_processglycine metabolism
GO:0006563biological_processL-serine metabolism
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0009626biological_processhypersensitive response
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005829cellular_componentcytosol
GO:0004372molecular_functionglycine hydroxymethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25477.1.S1_at--576--7391Chr05:20968355..20968379 (25 bp)
GTGAGGCATGTCATATCTCTCTTAA
LOC_Os05g35440
Os.25477.1.S1_at--913--351Chr05:20968310..20968334 (25 bp)
ATAATGGTTCGATTTCTCCTGGAGG
LOC_Os05g35440
Os.25477.1.S1_at--399--1051Chr05:20968196..20968312 (25 bp)
AGGTGTGCGGATTGGAACTCCTGCC
LOC_Os05g35440
Os.25477.1.S1_at--382--8171Chr05:20968183..20968207 (25 bp)
GGAACTCCTGCCATGACAACTAGAG
LOC_Os05g35440
Os.25477.1.S1_at--583--5031Chr05:20968129..20968153 (25 bp)
GCAGAATTCCTTTTGAGGGCAGCAC
LOC_Os05g35440
Os.25477.1.S1_at--133--3671Chr05:20967992..20968016 (25 bp)
CTTACAATTTGCCATGCCGGGATTT
LOC_Os05g35440
Os.25477.1.S1_at--466--5871Chr05:20967951..20967975 (25 bp)
GAGCCCTATATATATTTGCAGCCCT
LOC_Os05g35440
Os.25477.1.S1_at--571--9031Chr05:20967935..20967959 (25 bp)
TGCAGCCCTAGGATGGTTCAGATAT
LOC_Os05g35440
Os.25477.1.S1_at--1088--4491Chr05:20967862..20967886 (25 bp)
GCCGAGTTATCATAGCATCAAGTTA
LOC_Os05g35440
Os.25477.1.S1_at--803--8511Chr05:20967819..20967843 (25 bp)
TGGAAGTTGATCTCAATCTCCTCTC
LOC_Os05g35440
Os.25477.1.S1_at--998--9251Chr05:20967801..20967825 (25 bp)
TCCTCTCTCGAGCAATTTTGTACAG
LOC_Os05g35440
Target Sequence 
GTGAGGCATGTCATATCTCTCTTAATAAAACACCAATATATGGAGATAATGGTTCGATTTCTCCTGGAGGTGTGCGGATT
GGAACTCCTGCCATGACAACTAGAGGTTGCTTGGAGAGTGACTTTGAGATAATGGCAGAATTCCTTTTGAGGGCAGCACA
TATAGCAAGTATTGTTTTGAAGGAGCATGGAAGGCTTCAGAAGGATTTTCTGAAAGGTCTGGAGAACAATAATGACATTA
TTGAACTCCNGAATCAGGTGGAGACATTTGCCTTACAATTTGCCATGCCGGGATTTGATGTATAATATATGAGAGCCCTA
TATATATTTGCAGCCCTAGGATGGTTCAGATATCATTTGCAACTTGACACATGTTTGAACAAGTGAGTTTATGTGTAAAA
TGCCGAGTTATCATAGCATCAAGTTAGGAAAGCCATTTTTTCGTTGGAAGTTGATCTCAATCTCCTCTCTCGAGCAATTT
TGTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis