Browse Element(s) Details


Os.25849.3.S1_x_at

Description gb:NM_190252.1
DB_XREF= gi:34907587
GEN=B1078G07.35
TID=Os.25849.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.35 (B1078G07.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1078G07.35 (B1078G07.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6697010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66930OsAffx.26327.1.S1_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26327.1.S1_s_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930Os.15412.1.S1_x_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26326.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.16519.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed
LOC_Os01g66970Os.25849.1.S1_x_at11/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.25849.3.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_at8/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66980Os.7137.2.S1_x_at11/111+39227400..39229574expressed protein
LOC_Os01g66980Os.7137.1.S1_at11/111+39227400..39229574expressed protein
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25849.3.S1_x_at--793--1951NONE
ACTGGCACGCTCAAGGTTTACTCTC
NONE
Os.25849.3.S1_x_at--133--6831Chr01:39222865..39222889 (25 bp)
GTTTACTCTCCAAATTATGTCCTCC
LOC_Os01g66970
Os.25849.3.S1_x_at--184--5211Chr01:39222629..39222653 (25 bp)
GAATTGATCCCCATGATTCGCATTT
LOC_Os01g66970
Os.25849.3.S1_x_at--387--10691Chr01:39222602..39222626 (25 bp)
TTGCCATTGCCATTGCAGAGCAGCA
LOC_Os01g66970
Os.25849.3.S1_x_at--886--7451Chr01:39222549..39222573 (25 bp)
GTGTCCTCAAATTCAAGTGGTGCCA
LOC_Os01g66970
Os.25849.3.S1_x_at--15--2111Chr01:39222525..39222549 (25 bp)
ACATGCTGCCGAACTGTTGTTTTAA
LOC_Os01g66970
Os.25849.3.S1_x_at--651--10771Chr01:39222393..39222417 (25 bp)
TTGATGTTACTTTTGCTTGTGCGCC
LOC_Os01g66970
Os.25849.3.S1_x_at--414--10831Chr01:39222377..39222401 (25 bp)
TTGTGCGCCATGTAGTTGTGTTTGT
LOC_Os01g66970
Os.25849.3.S1_x_at--851--9991Chr01:39221886..39221906 (21 bp)
TAGCGCAACTCTTCAGTTCGCAGGA
LOC_Os01g66970
Os.25849.3.S1_x_at--669--9351Chr01:39221869..39221893 (25 bp)
TCGCAGGATTCTTTCTTCCATGTTA
LOC_Os01g66970
Os.25849.3.S1_x_at--958--731Chr01:39221845..39221869 (25 bp)
ATGTTATAGCCCGTTCTTGTTATGC
LOC_Os01g66970
Target Sequence 
ACTGGCACGCTCAAGGTTTACTCTCCAAATTATGTCCTCCCTCCAACCAAGTGTTGTTCAGCTGAAATGGACATGGATCT
TAGGCAAAGCTGGGTTGGACGAATTGATCCCCATGATTCGCATTTTCTTGCCATTGCCATTGCAGAGCAGCAGCTGCTGC
AAGCTGAATTTGATGATTGTGTGTCCTCAAATTCAAGTGGTGCCACATGCTGCCGAACTGTTGTTTTAATTTTGATGTTA
CTTTTGCTTGTGCGCCATGTAGTTGTGTTTGTGAGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGCGCAAC
TCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGTTCTTGTTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25849.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis