Browse Element(s) Details


Os.27174.1.A1_at

Description gb:AK120189.1
DB_XREF= gi:37989812
TID=Os.27174.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034P20, full insert sequence.
FL= gb:AK120189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1922911/11Protein kinase domain containing protein, expressed
LOC_Os09g193502/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19160Os.49805.1.S1_at8/119+11448826..11457901Protein kinase domain containing protein, expressed
LOC_Os09g19170OsAffx.17774.1.S1_at10/119+11458370..11459794expressed protein
LOC_Os09g19180OsAffx.6328.1.S1_at11/119+11464578..11466183Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19190Os.46785.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190Os.14771.1.S1_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.5.S1_x_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.442.1.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.30226.2.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19200OsAffx.29920.1.S1_at11/119+11478882..11479139hypothetical protein
LOC_Os09g19210OsAffx.17776.1.S1_at11/119+11479882..11480202hypothetical protein
LOC_Os09g19229Os.27174.1.A1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.29921.1.S1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_at3/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_x_at2/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.21209.1.S1_at1/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19250NANA9+11507464..11508686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19260OsAffx.17777.1.S1_at11/119+11510063..11512577hypothetical protein
LOC_Os09g19270OsAffx.17778.1.S1_at10/119+11514924..11517242hypothetical protein
LOC_Os09g19270OsAffx.12420.1.S1_at1/119+11514924..11517242hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27174.1.A1_at--793--7091Chr09:11483169..11483193 (25 bp)
GTCACTGGTGAGCTTCCGATATTAC
LOC_Os09g19229
Os.27174.1.A1_at--352--1031Chr09:11483143..11483167 (25 bp)
AGGTCATGGTCACATCATTCAGCGT
LOC_Os09g19229
Os.27174.1.A1_at--1087--3591Chr09:11483083..11483107 (25 bp)
CATTGCCGATCAGCGTCTTGGTAGT
LOC_Os09g19229
Os.27174.1.A1_at--336--7371Chr09:11483060..11483084 (25 bp)
GTGACTATGACGTTAGCTCCATGTG
LOC_Os09g19229
Os.27174.1.A1_at--468--6951Chr09:11483028..11483052 (25 bp)
GTAGAAATCGCTTTGCTGTGCACGG
LOC_Os09g19229
Os.27174.1.A1_at--971--5432Chr09:11575392..11575416 (25 bp)
GAACCTGTAGCAGCTCGGAGGCCAT
LOC_Os09g19350
Os.27174.1.A1_at--767--7991Chr09:11482894..11482918 (25 bp)
GGATGAGGTGGCTATGCTGCCCACA
LOC_Os09g19229
Os.27174.1.A1_at--96--672Chr09:11575234..11575258 (25 bp)
ATGAAGATCAAGCTGTACCTGTACC
LOC_Os09g19350
Os.27174.1.A1_at--733--811Chr09:11482822..11482846 (25 bp)
ATGGTGCATCGTTCATGGTTACTAA
LOC_Os09g19229
Os.27174.1.A1_at--581--8551Chr09:11482775..11482799 (25 bp)
TGGATCGCACCACAACAGTACAATG
LOC_Os09g19229
Os.27174.1.A1_at--180--6891Chr09:11482649..11482673 (25 bp)
GTATTTGTTATCTTCTTCCTGTGCT
LOC_Os09g19229
Target Sequence 
GTCACTGGTGAGCTTCCGATATTACAAGGTCATGGTCACATCATTCAGCGTGTGAAACAAAAGGTTGATTCAGGGGACAT
CAGCTCCATTGCCGATCAGCGTCTTGGTAGTGACTATGACGTTAGCTCCATGTGGAAGGTGGTAGAAATCGCTTTGCTGT
GCACGGAACCTGTAGCAGCTCGGAGGCCATCGATGGCAGCTGTGGTTGCACAGCTGAAGGACAGTCTAACATTGGAGGAA
GCCCGTGAGGAAAGGGGCCTCAAGGAGAANCCAACGGATGAGGTGGCTATGCTGCCCACATCCGGTCCATCGGCAAGATG
AAGATCAAGCTGTACCTGTACCTGCCCATGGTGCATCGTTCATGGTTACTAAATAATTGTGCATGAAGCCTATATGGATC
GCACCACAACAGTACAATGGTCTTGTGATAAATTATGTAATGTTAAGCTATATATGTATGCTCATGCGTGCATTGCGATG
GATTAAGTTTGTTTCTGTTTTTTTCCTAAGTGTACATTTGGTATTTGTTATCTTCTTCCTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27174.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis