Browse Element(s) Details


Os.28290.1.S1_at

Description gb:AK064824.1
DB_XREF= gi:32974842
TID=Os.28290.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.28290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for neoxanthin cleavage enzyme-like protein, partial cds, clone: pNS-YP39
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000F03, full insert sequence.
FL= gb:AK099580.1 gb:AK064824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4751011/11nine-cis-epoxycarotenoid dioxygenase4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47480OsAffx.20858.5.S1_x_at9/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.15.S1_s_at7/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.1.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.5.S1_x_at5/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.3.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.2.S1_x_at4/112+28997474..29009057hypothetical protein
LOC_Os02g47480OsAffx.20858.4.S1_x_at3/112+28997474..29009057hypothetical protein
LOC_Os02g47480Os.41695.4.S1_x_at2/112+28997474..29009057hypothetical protein
LOC_Os02g47490Os.50195.1.S1_at11/112+29013344..29014904expressed protein
LOC_Os02g47500Os.50589.1.S1_at11/112+29015804..29019172nodulin, putative, expressed
LOC_Os02g47510Os.28290.1.S1_at11/112+29020221..29022390nine-cis-epoxycarotenoid dioxygenase4, putative, expressed
LOC_Os02g47520OsAffx.12538.1.S1_at11/112+29027503..29028196hypothetical protein
LOC_Os02g47530NANA2+29033065..29033391hypothetical protein
LOC_Os02g47540OsAffx.22947.1.S1_x_at11/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.3.S1_x_at5/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.2.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.5.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47550NANA2+29046402..29046770hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009688biological_processabscisic acid biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28290.1.S1_at--464--8171Chr02:29020759..29020783 (25 bp)
GGAACTTCGACTTCCCCGTGATCAA
LOC_Os02g47510
Os.28290.1.S1_at--117--2491Chr02:29020712..29020736 (25 bp)
AACAGGTACGGCTACTTCGGCGTCG
LOC_Os02g47510
Os.28290.1.S1_at--977--5411Chr02:29020577..29020601 (25 bp)
GAACCGTTCTTCGTGGCCGACGACG
LOC_Os02g47510
Os.28290.1.S1_at--932--2551Chr02:29020544..29020568 (25 bp)
AACGGCAACGAGGATGACGGGTACT
LOC_Os02g47510
Os.28290.1.S1_at--61--1911Chr02:29020528..29020552 (25 bp)
ACGGGTACTTGGTGTGCTACGTCCA
LOC_Os02g47510
Os.28290.1.S1_at--551--9931Chr02:29020406..29020430 (25 bp)
TACGGCTTCCATGGCCTGTTCGTCA
LOC_Os02g47510
Os.28290.1.S1_at--184--8791Chr02:29020390..29020414 (25 bp)
TGTTCGTCACGCAGGCCGAGCTCCA
LOC_Os02g47510
Os.28290.1.S1_at--195--3391Chr02:29020361..29020385 (25 bp)
CAGCACCAATGATACAAACCAACGT
LOC_Os02g47510
Os.28290.1.S1_at--247--5211Chr02:29020325..29020349 (25 bp)
GAATTCACGTATACATTTTCCATAC
LOC_Os02g47510
Os.28290.1.S1_at--936--311Chr02:29020304..29020328 (25 bp)
ATACGAAATTACGAGTTACTGTGGA
LOC_Os02g47510
Os.28290.1.S1_at--871--6891Chr02:29020272..29020296 (25 bp)
GTATAAGTGCACACATACTTCGAGA
LOC_Os02g47510
Target Sequence 
GGAACTTCGACTTCCCCGTGATCAACCCGGCTTTCCTCGGCCGCCGCAACAGGTACGGCTACTTCGGCGTCGGCGACCCC
GCGCCCAAGATCGGCGGCGTGGCCAAGCTCGACTTCGACCGCGCCGGCGAGGGCGACTGCACCGTGGCGCAGCGCGACTT
CGGGCCCGGGTGCTTCGCCGGCGAACCGTTCTTCGTGGCCGACGACGTCGAGGGCAACGGCAACGAGGATGACGGGTACT
TGGTGTGCTACGTCCACGACGAGGCCACCGGCGAGAACCGGTTCGTGGTGATGGACGCGCGGTCGCCGGACCTGGAGATC
GTCGCGGAGGTGCAGCTGCCCGGACGCGTCCCCTACGGCTTCCATGGCCTGTTCGTCACGCAGGCCGAGCTCCAGTCACA
GCACCAATGATACAAACCAACGTAGCAATGTATAGAATTCACGTATACATTTTCCATACGAAATTACGAGTTACTGTGGA
ACACGTAGTATAAGTGCACACATACTTCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis