Browse Element(s) Details


Os.31375.1.S2_at

Description gb:NM_189388.1
DB_XREF= gi:34905859
GEN=P0458E05.6
TID=Os.31375.1
CNT=2
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.31375 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative chromosome condensation factor (P0458E05.6), mRNA.
PROD=putative chromosome condensation factor
FL= gb:AK107433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7341011/11Chromosome condensation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73344Os.27691.2.S1_x_at1/111+42837861..42844028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73356NANA1+42844884..42845510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73370OsAffx.21929.1.S1_at11/111+42853759..42854229LRK14, putative
LOC_Os01g73370OsAffx.21929.1.S1_x_at10/111+42853759..42854229LRK14, putative
LOC_Os01g73380OsAffx.30226.2.S1_s_at7/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_x_at5/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.24587.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.2.S1_x_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.19052.1.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73390OsAffx.24027.1.S1_at11/111+42859099..42860801hypothetical protein
LOC_Os01g73400OsAffx.24028.1.S1_at11/111+42864536..42864797hypothetical protein
LOC_Os01g73410Os.31375.1.S2_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73410Os.31375.1.S1_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73420Os.6110.1.S1_at11/111+42874549..42875838Mitochondrial carrier protein, expressed
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein
LOC_Os01g73440OsAffx.24030.1.S1_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73440OsAffx.24030.1.S1_x_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003682molecular_functionchromatin binding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31375.1.S2_at--500--5291Chr01:42872588..42872612 (25 bp)
GAATGGCATCCACCAGCTACAAAAT
LOC_Os01g73410
Os.31375.1.S2_at--651--971Chr01:42872622..42872646 (25 bp)
AGTGCTTTAAACACGCCTAGCCTGA
LOC_Os01g73410
Os.31375.1.S2_at--15--5511Chr01:42872645..42872669 (25 bp)
GAACACTGGAAGATCCTTGCATGCA
LOC_Os01g73410
Os.31375.1.S2_at--100--2871Chr01:42872722..42872746 (25 bp)
AAGTGAGCACTCACAGCCATCGGGT
LOC_Os01g73410
Os.31375.1.S2_at--290--4431Chr01:42872737..42872761 (25 bp)
GCCATCGGGTTTCAAGCCCTCATGA
LOC_Os01g73410
Os.31375.1.S2_at--103--4551Chr01:42872752..42872776 (25 bp)
GCCCTCATGACACTGAACTTTCAAA
LOC_Os01g73410
Os.31375.1.S2_at--1149--691Chr01:42872800..42872824 (25 bp)
ATGAGTTGTTCAGTGCAAGCGGTAA
LOC_Os01g73410
Os.31375.1.S2_at--920--6331Chr01:42872847..42872871 (25 bp)
GATGCTAGGTCCCTTCAAAATGGTG
LOC_Os01g73410
Os.31375.1.S2_at--734--2371Chr01:42872883..42872907 (25 bp)
AAACCTCGAGGGACAGTATCTCTGT
LOC_Os01g73410
Os.31375.1.S2_at--987--1191Chr01:42872897..42872921 (25 bp)
AGTATCTCTGTCCAGCAACCAAGTT
LOC_Os01g73410
Os.31375.1.S2_at--322--2511Chr01:42872972..42872996 (25 bp)
AACATTACGCGATGGGACTCGGGAT
LOC_Os01g73410
Target Sequence 
GAATGGCATCCACCAGCTACAAAATGAGTCTATCAGTGCTTTAAACACGCCTAGCCTGAACACTGGAAGATCCTTGCATG
CAAATGGAATCTCAAGTCAACATAAATCACTGGGTAGTATTAGTGAACATAGTGAAGTGAGCACTCACAGCCATCGGGTT
TCAAGCCCTCATGACACTGAACTTTCAAATCGAAGGGCACGGATCAGTAGTGATGAGTTGTTCAGTGCAAGCGGTAAATC
GGATGATAGCAATAACAGGGATGCTAGGTCCCTTCAAAATGGTGAAGATGGTTACAAACCTCGAGGGACAGTATCTCTGT
CCAGCAACCAAGTTCAGGCTGAATGGATTGAACAGTATGAACCAGGGGTATACATTACACTGACAACATTACGCGATGGG
ACTCGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31375.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis