Browse Element(s) Details


Os.32823.2.S1_s_at

Description gb:NM_189860.1
DB_XREF= gi:34906803
GEN=P0594D10.15
TID=Os.32823.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0594D10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0594D10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4283410/11expressed protein
LOC_Os11g332804/11hypothetical protein
LOC_Os07g259601/11expressed protein
LOC_Os07g252201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32823.2.S1_s_at--694--2351Chr07:25654964..25654988 (25 bp)
AAAGCTCGAGAGTTAACTGTGCGGC
LOC_Os07g42834
Os.32823.2.S1_s_at--615--1591Chr07:25654966..25654990 (25 bp)
AGCTCGAGAGTTAACTGTGCGGCGT
LOC_Os07g42834
Os.32823.2.S1_s_at--859--72915Chr12:11402863..11402883 (21 bp)
GTGCGGCGTGCAATGGAGGTCGAGA
NONE
Os.32823.2.S1_s_at--497--4371Chr07:25655100..25655556 (25 bp)
CCAACGGTCCGACGTAGAGCACGAG
LOC_Os07g42834
Os.32823.2.S1_s_at--919--7771NONE
GGTCCGACGTAGAGCACGAGCAGCA
NONE
Os.32823.2.S1_s_at--534--4231Chr07:25655108..25655564 (25 bp)
CCGACGTAGAGCACGAGCAGCAGAG
LOC_Os07g42834
Os.32823.2.S1_s_at--743--7731Chr07:25655624..25655648 (25 bp)
GGTGGTGTTCCCGAGCACAAAGCAT
LOC_Os07g42834
Os.32823.2.S1_s_at--1011--7411Chr07:25655628..25655652 (25 bp)
GTGTTCCCGAGCACAAAGCATCCGG
LOC_Os07g42834
Os.32823.2.S1_s_at--1106--4573Chr11:19182032..19182056 (25 bp)
GCGCAAGGACTTGGCTTGCAGAGCT
LOC_Os11g33280
Os.32823.2.S1_s_at--596--2072Chr11:19182040..19182064 (25 bp)
ACTTGGCTTGCAGAGCTGTGGAAGA
LOC_Os11g33280
Os.32823.2.S1_s_at--1151--6032Chr11:19182066..19182090 (25 bp)
GAGATCGGCCAGTGGCGGCAATGGC
LOC_Os11g33280
Target Sequence 
AAAGCTCGAGAGTTAACTGTGCGGCGTGCAATGGAGGTCGAGAGGATAGTGAAGCTCCGACCGCTATACGCATCAAGGTG
TGGGGTGCCAGGAGCAGCACTTCGACCTTGGGTTTGGTTTTTGCCGGGCTTTACAACCAACGGTCCGACGTAGAGCACGA
GCAGCAGAGGAGAAGGAGAGGAGGGGCGCCGGTTTTCCGGCGGCTGGAAGATGGCGACGCCGGCGGCGGGTGGTGTTCCC
GAGCACAAAGCATCCGGGGAGTGCGGTGGCTGGCGGAGAAAGTGAAGGAGAAGGCCGAAACGGCGACGACAAGAGCTCGA
CCGTGGCAACAAAAGGAGTGGCGGTGGTGGCTTGTTGTGGGGGCTAAAAGAGAGGGGAAAAGGGAAAAATGGGTTCACCT
CGTCGAGGCAAACATGATGGCGCAAGGACTTGGCTTGCAGAGCTGTGGAAGAGGAGATCGGCCAGTGGCGGCAATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32823.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis