Browse Element(s) Details


Os.3293.1.S1_at

Description gb:AF372831.1
DB_XREF= gi:13991924
TID=Os.3293.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.3293 (NCBI UniGene Cluster)
DEF=Oryza sativa hexokinase I mRNA, complete cds.
PROD=hexokinase I
FL= gb:AF372831.1 gb:AK065207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4476011/11Hexokinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44710OsAffx.21870.3.S1_x_at11/115+25910994..25914096hypothetical protein
LOC_Os05g44710OsAffx.21870.2.S1_x_at11/115+25910994..25914096hypothetical protein
LOC_Os05g44720OsAffx.828.1.S1_x_at6/115+25914753..25916504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.447.1.S1_at7/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.22947.2.S1_x_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730Os.52609.1.S1_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44740OsAffx.828.1.S1_x_at6/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20017.1.S1_at5/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740Os.33601.3.S1_x_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.2.S1_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20631.1.S1_x_at2/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.1.S1_x_at1/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44750NANA5+25931406..25931809hypothetical protein
LOC_Os05g44760Os.3293.1.S1_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44760Os.20973.1.S1_s_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44770Os.10619.1.S1_at11/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.10619.1.S2_at6/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.11775.2.S1_x_at1/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44780Os.53939.1.S1_at11/115+25944983..25948154expressed protein
LOC_Os05g44786OsAffx.31479.4.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44786OsAffx.31479.1.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44792OsAffx.31479.5.S1_x_at9/115+25959745..25966219hypothetical protein
LOC_Os05g44792Os.49246.1.S1_x_at1/115+25959745..25966219hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3293.1.S1_at--785--1291Chr05:25938488..25938512 (25 bp)
AGATGCCTAGGACTGTCATTGCCTT
LOC_Os05g44760
Os.3293.1.S1_at--815--3591Chr05:25938504..25938528 (25 bp)
CATTGCCTTGGATGGTGGGCTCTAT
LOC_Os05g44760
Os.3293.1.S1_at--742--371Chr05:25938561..25938585 (25 bp)
ATCAACTCTAACAGACCTTCTTGGG
LOC_Os05g44760
Os.3293.1.S1_at--617--711Chr05:25938587..25938611 (25 bp)
ATGATGTCTCGTCTTCGGTGGTTAC
LOC_Os05g44760
Os.3293.1.S1_at--1084--10611Chr05:25938600..25938624 (25 bp)
TTCGGTGGTTACCAAGCTGGCCAAC
LOC_Os05g44760
Os.3293.1.S1_at--424--4711Chr05:25938615..25938639 (25 bp)
GCTGGCCAACGATGGTTCTGGCATT
LOC_Os05g44760
Os.3293.1.S1_at--609--9351Chr05:25938661..25938685 (25 bp)
TCGCACTCCCAGTATGCCGAGATCG
LOC_Os05g44760
Os.3293.1.S1_at--69--591Chr05:25938674..25938698 (25 bp)
ATGCCGAGATCGACTAGCTTTAAGG
LOC_Os05g44760
Os.3293.1.S1_at--1017--3271Chr05:25938721..25938745 (25 bp)
CAAACTCCGTTTGTAGGTTCTCATT
LOC_Os05g44760
Os.3293.1.S1_at--613--10871Chr05:25938806..25938830 (25 bp)
TTGGCTATTCTGAGGGCAAACATAA
LOC_Os05g44760
Os.3293.1.S1_at--588--2511Chr05:25938824..25938848 (25 bp)
AACATAAGTGCCTCTGCAGCGGGAT
LOC_Os05g44760
Target Sequence 
AGATGCCTAGGACTGTCATTGCCTTGGATGGTGGGCTCTATGAACATTACAAGAAGTTCAGCAGTTGCTTAGAATCAACT
CTAACAGACCTTCTTGGGGATGATGTCTCGTCTTCGGTGGTTACCAAGCTGGCCAACGATGGTTCTGGCATTGGAGCTGC
TCTTCTCGCAGCCTCGCACTCCCAGTATGCCGAGATCGACTAGCTTTAAGGATGATCTTGATGAATGATGAATCAAACTC
CGTTTGTAGGTTCTCATTTCCCCCTTCAAAATCCACATAATACTCCTGGCTCCCCCCTTGAAATCTTACCATCTTTTTTT
GGCTATTCTGAGGGCAAACATAAGTGCCTCTGCAGCGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis