Browse Element(s) Details


Os.32964.1.S1_at

Description gb:AK102239.1
DB_XREF= gi:32987448
TID=Os.32964.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039A07.31 (P0039A07.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088C23, full insert sequence.
FL= gb:AK102239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6515011/11POT family protein, expressed
LOC_Os01g651401/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65100Os.9321.1.S1_a_at11/111+38117333..38119737POT family protein, expressed
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32964.1.S1_at--437--412Chr01:38143175..38143199 (25 bp)
ATCATCGGGCTCGACGAGTTCTTCT
LOC_Os01g65150
Os.32964.1.S1_at--291--9331Chr01:38143236..38143260 (25 bp)
TCGCCATGTCCCTGAGCGTGCGCGG
LOC_Os01g65150
Os.32964.1.S1_at--201--3691Chr01:38143398..38143422 (25 bp)
CTTTGGAGGTCGCCGTGTTCGTCTA
LOC_Os01g65150
Os.32964.1.S1_at--736--531Chr01:38143424..38143448 (25 bp)
ATCGCGAAGCGATACGTCTACAAGA
LOC_Os01g65150
Os.32964.1.S1_at--569--5851Chr01:38143457..38143481 (25 bp)
GAGCCATGATTCTTCCGAGTTCGGA
LOC_Os01g65150
Os.32964.1.S1_at--31--9291Chr01:38143470..38143494 (25 bp)
TCCGAGTTCGGATTAGAGTGTGTAA
LOC_Os01g65150
Os.32964.1.S1_at--1025--351Chr01:38143494..38143518 (25 bp)
ATAAGTCTGAAAAATGGTCCACATG
LOC_Os01g65150
Os.32964.1.S1_at--981--2431Chr01:38143504..38143528 (25 bp)
AAAATGGTCCACATGCTCAAAGATG
LOC_Os01g65150
Os.32964.1.S1_at--969--2791Chr01:38143523..38143547 (25 bp)
AAGATGTGTACTCTTTCCCGTTTCA
LOC_Os01g65150
Os.32964.1.S1_at--1108--9891Chr01:38143531..38143555 (25 bp)
TACTCTTTCCCGTTTCATAATTCTT
LOC_Os01g65150
Os.32964.1.S1_at--805--3651Chr01:38143535..38143559 (25 bp)
CTTTCCCGTTTCATAATTCTTACAT
LOC_Os01g65150
Target Sequence 
ATCATCGGGCTCGACGAGTTCTTCTACGACCAGGTGCCCGACGACCTGCGCAGCGTCGGGCTCGCCATGTCCCTGAGCGT
GCGCGGCGTCGGGAGCTACGCTAGCGGCGTGCTCGTGTCGGCGATCGACTGCGCGACGAGGAGCGGGGGAGAGAGCTGGT
TCTCCGACAACCTCAACCGCGCGCACCTCGACTACTTCTACTGGATCCTCGCCGCGCTCGCCGCTTTGGAGGTCGCCGTG
TTCGTCTACATCGCGAAGCGATACGTCTACAAGAACAAAGGCGAGCCATGATTCTTCCGAGTTCGGATTAGAGTGTGTAA
TAAGTCTGAAAAATGGTCCACATGCTCAAAGATGTGTACTCTTTCCCGTTTCATAATTCTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis