Browse Element(s) Details


Os.34602.2.S1_x_at

Description gb:NM_184066.1
DB_XREF= gi:34895233
GEN=OJ1212_B09.16
TID=Os.34602.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1212_B09.18 (OJ1212_B09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1212_B09.16 (OJ1212_B09.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g024509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02390Os.1849.1.S1_at11/111+763983..766475TAK14, putative, expressed
LOC_Os01g02390OsAffx.10882.2.S1_x_at3/111+763983..766475TAK14, putative, expressed
LOC_Os01g02400Os.1977.1.S1_a_at11/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02400Os.1977.3.S1_x_at9/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02410Os.48023.1.A1_at8/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.33796.1.S1_x_at5/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.26617.2.S1_x_at4/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.7310.1.S1_at3/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.45516.2.S1_x_at2/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.12928.1.S1_at1/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02420OsAffx.23090.4.S1_x_at4/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.2.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.1.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02430Os.778.2.S1_x_at9/111+782975..785421TAK14, putative, expressed
LOC_Os01g02430Os.778.1.S1_at3/111+782975..785421TAK14, putative, expressed
LOC_Os01g02440OsAffx.10881.2.S1_x_at11/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.2.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.4.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.1.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02450Os.34602.2.S1_x_at9/111+789890..790892hypothetical protein
LOC_Os01g02460OsAffx.23090.4.S1_x_at7/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.1.S1_x_at2/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.2.S1_x_at1/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02470NANA1+793644..794335hypothetical protein
LOC_Os01g02480NANA1+797700..798456retrotransposon, putative, centromere-specific
LOC_Os01g02490OsAffx.23089.1.S1_x_at10/111+801325..802501hypothetical protein
LOC_Os01g02500Os.38171.2.S1_at11/111+804652..806523amidase family protein, putative
LOC_Os01g02510NANA1+814344..814970retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34602.2.S1_x_at--614--8011Chr01:790195..790219 (25 bp)
GGAGGTATACGAGCCATTGCGCCTT
LOC_Os01g02450
Os.34602.2.S1_x_at--887--2091Chr01:790160..790184 (25 bp)
ACATGTTCCTGTTCGAATCCGCAAA
LOC_Os01g02450
Os.34602.2.S1_x_at--851--8111Chr01:790131..790155 (25 bp)
GGACGGTCGCGGAAGCACTGCTCAA
LOC_Os01g02450
Os.34602.2.S1_x_at--1156--8231Chr01:790079..790103 (25 bp)
GGCACTTGGAGTTCAGGCAATCCGA
LOC_Os01g02450
Os.34602.2.S1_x_at--929--3031Chr01:790061..790085 (25 bp)
AATCCGAGAATACCTCAAGCTCTGG
LOC_Os01g02450
Os.34602.2.S1_x_at--588--2691Chr01:790045..790069 (25 bp)
AAGCTCTGGTCACTTCTGCAAAATG
LOC_Os01g02450
Os.34602.2.S1_x_at--203--2451Chr01:790026..790050 (25 bp)
AAAATGCTGGTTGCAATCCCTCTGA
LOC_Os01g02450
Os.34602.2.S1_x_at--284--2971Chr01:789981..790005 (25 bp)
AATGGGACAGCTCAGGACAATACTC
LOC_Os01g02450
Os.34602.2.S1_x_at--344--331Chr01:789962..789986 (25 bp)
ATACTCCTCCAAGTCGGCATACAGA
LOC_Os01g02450
Os.34602.2.S1_x_at--454--3591Chr01:789848..789960 (25 bp)
CATTATTTCTAGATGCTGGACAGCG
NONE
Os.34602.2.S1_x_at--1060--8511Chr01:789832..789856 (25 bp)
TGGACAGCGGATCGACTACGTCGTC
NONE
Target Sequence 
GGAGGTATACGAGCCATTGCGCCTTCCATCTTCGAACATGTTCCTGTTCGAATCCGCAAACGCAGGACGGTCGCGGAAGC
ACTGCTCAATAAAGCATGGATCAGAGACATCAGCGGGGCACTTGGAGTTCAGGCAATCCGAGAATACCTCAAGCTCTGGT
CACTTCTGCAAAATGCTGGTTGCAATCCCTCTGAGCAAGATGTGATCTGTTGGAAATGGGACAGCTCAGGACAATACTCC
TCCAAGTCGGCATACAGAGCATTATTTCTAGATGCTGGACAGCGGATCGACTACGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34602.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis