Browse Element(s) Details


Os.35093.1.A1_x_at

Description gb:NM_188076.1
DB_XREF= gi:34903235
TID=Os.35093.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1666011/11transposon protein, putative, unclassified, expressed
LOC_Os08g148803/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed
LOC_Os01g16680Os.47508.1.A1_s_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680OsAffx.2475.1.S1_x_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680Os.11892.1.S1_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35093.1.A1_x_at--329--10152Chr08:8963157..8963180 (24 bp)
TATCGGTACTCCTCATTGTGCAAAA
LOC_Os08g14880
Os.35093.1.A1_x_at--431--10511Chr01:9444943..9444967 (25 bp)
TTCAGCTAGACCTATCGGTGGCTTA
LOC_Os01g16660
Os.35093.1.A1_x_at--379--7011Chr01:9444864..9444888 (25 bp)
GTACTAGAACTTCAACCTGTGACAG
LOC_Os01g16660
Os.35093.1.A1_x_at--106--5652Chr08:8963573..8963597 (25 bp)
GACAGAGATGCAGCCACAGCCATAT
LOC_Os08g14880
Os.35093.1.A1_x_at--399--6152Chr08:8963706..8963730 (25 bp)
GAGGTTCCCAATGACCAAGCATTTT
LOC_Os08g14880
Os.35093.1.A1_x_at--266--1551Chr01:9444695..9444719 (25 bp)
AGCATTTTTACATGTCTCACGGTAC
LOC_Os01g16660
Os.35093.1.A1_x_at--390--3751Chr01:9444680..9444704 (25 bp)
CTCACGGTACTATGCTGCTTTGGAT
LOC_Os01g16660
Os.35093.1.A1_x_at--162--2051Chr01:9444649..9444673 (25 bp)
ACTTCAAATCCTACTCATGTCTTAA
LOC_Os01g16660
Os.35093.1.A1_x_at--671--2011Chr01:9444637..9444661 (25 bp)
ACTCATGTCTTAATGACTCCAGAAA
LOC_Os01g16660
Os.35093.1.A1_x_at--700--5512Chr08:8964805..8964829 (25 bp)
GAAAATCAAGGGTTGCACCAGCAAG
NONE
Os.35093.1.A1_x_at--881--5172Chr08:8964825..8964849 (25 bp)
GCAAGGGAGGTCAATTCAACAATTT
NONE
Target Sequence 
TATCGGTACTCCTCATTGTGCAAAATGTTTGTTAAAATAGCTTGTCGAGCTGCAAAATCTGAAGAAACATACTCCATGTC
TACTAATTGTGCCGAAAAATTGGCAGAAGATATAGAGAACTTCTTGAAAATCAGAGGTGATCCAGATTTAGACAGCTCCC
CTTCCCCACAAGTTGCGAAAGAAAATCAGATGGCTAGTAAACCAAAAGGCATTAAGCTCAAGAGAAAGGAAATTCGTGGT
TCAGCTAGACCTATCGGTGGCTTAGAGAAATCATCTCAGAAAAGGAAAAAGAAGAAGAATGAAGACTCCCCAGCCGAGGT
ACTAGAACTTCAACCTGTGACAGAGATGCAGCCACAGCCATATGCTACAGTACTGGGTAATCTAGAGGTTCCCAATGACC
AAGCATTTTTACATGTCTCACGGTACTATGCTGCTTTGGATGCATCAACTTCAAATCCTACTCATGTCTTAATGACTCCA
GAAAATCAAGGGTTGCACCAGCAAGGGAGGTCAATTCAACAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35093.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis