Browse Element(s) Details


Os.37000.2.S1_x_at

Description gb:NM_187328.1
DB_XREF= gi:34901741
GEN=P0434A03.37
TID=Os.37000.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.37 (P0434A03.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0434A03.37 (P0434A03.37), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2979411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29750OsAffx.16482.1.S1_x_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750OsAffx.16482.1.S1_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750Os.46631.1.S1_x_at3/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29760Os.20514.1.S1_x_at11/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29760OsAffx.22518.1.S1_x_at1/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29770Os.19330.3.S1_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29770Os.19330.1.S1_x_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29780Os.36953.2.S1_x_at11/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29780Os.36953.1.S1_at10/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29794Os.37000.2.S1_x_at11/117+17512388..17519010expressed protein
LOC_Os07g29810OsAffx.28664.1.S1_at11/117+17522393..17526402NB-ARC domain containing protein
LOC_Os07g29820Os.26923.1.A1_at9/117+17527858..17533293NB-ARC domain containing protein, expressed
LOC_Os07g29830OsAffx.16484.2.S1_at11/117+17537183..17537676hypothetical protein
LOC_Os07g29840Os.41695.5.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840OsAffx.29376.1.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.3.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.4.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.2.S1_x_at1/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.51891.1.S1_at1/117+17538268..17551082SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37000.2.S1_x_at--826--9351Chr07:17513093..17513117 (25 bp)
TCGCACAGACACTCCTTTGGAGGAT
LOC_Os07g29794
Os.37000.2.S1_x_at--252--2851Chr07:17513124..17513283 (25 bp)
AAGTCACTTGTCTGGTGCCTTATAG
LOC_Os07g29794
Os.37000.2.S1_x_at--928--7771Chr07:17513272..17513296 (25 bp)
GGTGCCTTATAGACACGTGTATACC
LOC_Os07g29794
Os.37000.2.S1_x_at--604--1291Chr07:17513315..17513339 (25 bp)
AGATCCAAGACGTCTCTATGCACCA
LOC_Os07g29794
Os.37000.2.S1_x_at--757--871Chr07:17513339..17513363 (25 bp)
AGGCCGCCTTTATCACATTGTTGAA
LOC_Os07g29794
Os.37000.2.S1_x_at--841--2151Chr07:17513645..17513669 (25 bp)
ACAGCTGTTCCGGTGGATGGCAGAT
LOC_Os07g29794
Os.37000.2.S1_x_at--1027--1491Chr07:17513673..17513697 (25 bp)
AGCACATTGTGCTATCTTGCAACAT
LOC_Os07g29794
Os.37000.2.S1_x_at--682--6011Chr07:17518632..17518656 (25 bp)
GAGAGAACCATGAAGCCACCTGAGA
LOC_Os07g29794
Os.37000.2.S1_x_at--1137--4931Chr07:17518716..17518740 (25 bp)
GCATTGAGGCGTGCCGTTGCTCTAG
LOC_Os07g29794
Os.37000.2.S1_x_at--1104--4731Chr07:17518803..17518827 (25 bp)
GCTGATGAGGCCTCTCCGGTATTGC
LOC_Os07g29794
Os.37000.2.S1_x_at--395--6871Chr07:17518821..17518845 (25 bp)
GTATTGCCCGACAGTGGACTGCGAA
LOC_Os07g29794
Target Sequence 
TCGCACAGACACTCCTTTGGAGGATGTATTCAAGTCACTTGTCTGGTGCCTTATAGACACGTGTATACCTGAAAGTGCGA
TGTTGAGAGATCCAAGACGTCTCTATGCACCAGGCCGCCTTTATCACATTGTTGAAAGGAAACCATTCAGATGTGGAAGA
TATCCCCCTGTTGTAAGAACAGCTGTTCCGGTGGATGGCAGATTTGAGCACATTGTGCTATCTTGCAACATGATTTCTGA
TCATGCTATTATCTGGATCGAAAGAGAAGCTCAAAGGGGACTAGATTTGATGCTGGAGAACGAGAGAACCATGAAGCCAC
CTGAGACGCAAAGAATGGACGATGAAATCGCCATCGAGAGGGATCATGATGAGGAGCAGAAGGCGGCATTGAGGCGTGCC
GTTGCTCTAGGGGTCGCAGATGTTAATGTGCCATCAGCATATGGTACATTCAGTGAAAATCTGACTCCTGAGGCTGATGA
GGCCTCTCCGGTATTGCCCGACAGTGGACTGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37000.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis