Browse Element(s) Details


Os.3920.1.S1_at

Description gb:AB047923.1
DB_XREF= gi:9967161
GEN=COX6b2
TID=Os.3920.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.3920 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) COX6b2 mRNA for cytochrome c oxidase subunit 6b, complete cds.
PROD=cytochrome c oxidase subunit 6b
FL= gb:AK111257.1 gb:AB047923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4206011/11Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g251002/11transposon protein, putative, unclassified
LOC_Os09g118702/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g42110Os.52749.1.S1_at8/114+24712990..24716977Cell division control protein 48 homolog B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0004129molecular_functioncytochrome-c oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3920.1.S1_at--447--1151Chr04:24689945..24689969 (25 bp)
AGTCTCCGACGCCACGAGATGGCCG
LOC_Os04g42060
Os.3920.1.S1_at--216--2491Chr04:24688810..24688834 (25 bp)
AACAGCACCTGCTGATTTCCGCTTT
LOC_Os04g42060
Os.3920.1.S1_at--637--8831Chr04:24688798..24688822 (25 bp)
TGATTTCCGCTTTCCTACAACAAAC
LOC_Os04g42060
Os.3920.1.S1_at--1155--3251Chr04:24688778..24688802 (25 bp)
CAAACCAAACCAGGCATTGTTTCAC
LOC_Os04g42060
Os.3920.1.S1_at--626--6971Chr04:24688662..24688765 (25 bp)
GTACCACAGGTGTGTGAATGCCAAA
LOC_Os04g42060
Os.3920.1.S1_at--375--5391Chr04:24688634..24688658 (25 bp)
GAAGCAACTGCTGACTGTGAGAAAT
LOC_Os04g42060
Os.3920.1.S1_at--930--3111Chr04:24688612..24688636 (25 bp)
AATTTGCCAAGTACTACCGGTCTCT
LOC_Os04g42060
Os.3920.1.S1_at--776--7811Chr04:24688594..24688618 (25 bp)
GGTCTCTCTGCCCAGCAGAATGGGT
LOC_Os04g42060
Os.3920.1.S1_at--477--7634Chr04:14472676..14472700 (25 bp)
GGGACATTTGCAGGACCACTCTAAA
LOC_Os04g25100
Os.3920.1.S1_at--99--974Chr04:14472687..14472711 (25 bp)
AGGACCACTCTAAATCTCCTGTTTG
LOC_Os04g25100
Os.3920.1.S1_at--148--6012Chr06:23215696..23215720 (25 bp)
GAGAGTCTTCTCAGATCAGTCCACT
NONE
Target Sequence 
AGTCTCCGACGCCACGAGATGGCCGAGATTGAGATAAAAACAGCACCTGCTGATTTCCGCTTTCCTACAACAAACCAAAC
CAGGCATTGTTTCACACGCTATATTGAGTACCACAGGTGTGTGAATGCCAAAGGGGAAGCAACTGCTGACTGTGAGAAAT
TTGCCAAGTACTACCGGTCTCTCTGCCCAGCAGAATGGGTTGAGAAGTGGAATGAACAGAGGGAGAATGGGACATTTGCA
GGACCACTCTAAATCTCCTGTTTGAGAGTCTTCTCAGATCAGTCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis