Browse Element(s) Details


Os.40473.1.S1_at

Description gb:NM_194165.1
DB_XREF= gi:34915367
TID=Os.40473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1119_A04.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1119_A04.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0266011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02600Os.46785.2.S1_x_at3/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.30226.2.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.442.1.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02610Os.34986.1.S1_at2/117+937911..940047hypothetical protein
LOC_Os07g02620OsAffx.21073.1.S1_at11/117+943506..945077NB-ARC domain containing protein
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein
LOC_Os07g02650OsAffx.5186.1.S1_at11/117+956252..957608hypothetical protein
LOC_Os07g02660Os.40473.1.S1_at11/117+958899..961525NB-ARC domain containing protein
LOC_Os07g02674OsAffx.16053.1.S1_x_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16052.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.28237.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.2.S1_s_at11/117+962718..968699expressed protein
LOC_Os07g02674Os.34986.1.S1_at1/117+962718..968699expressed protein
LOC_Os07g02674Os.26818.2.S1_at1/117+962718..968699expressed protein
LOC_Os07g02690Os.39706.1.S1_at11/117+971167..971827expressed protein
LOC_Os07g02690Os.23172.1.S1_x_at3/117+971167..971827expressed protein
LOC_Os07g02690Os.46022.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.36607.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.40003.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02700OsAffx.5189.1.S1_at4/117+974620..975048hypothetical protein
LOC_Os07g02700Os.23172.1.S1_x_at2/117+974620..975048hypothetical protein
LOC_Os07g02700Os.46022.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02700Os.40003.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40473.1.S1_at--523--2811Chr07:959831..959855 (25 bp)
AAGATAGCGAACTTTGGAACGACAA
LOC_Os07g02660
Os.40473.1.S1_at--249--8311Chr07:959805..959829 (25 bp)
GGCTCTTAGAGTGACCTTACTTACT
LOC_Os07g02660
Os.40473.1.S1_at--49--7371Chr07:959795..959819 (25 bp)
GTGACCTTACTTACTCAAGAAGCTT
LOC_Os07g02660
Os.40473.1.S1_at--942--6891Chr07:959653..959677 (25 bp)
GTATCTACACTCTACTTTTGAGAGC
LOC_Os07g02660
Os.40473.1.S1_at--133--191Chr07:959626..959650 (25 bp)
ATTTCAACGCTCAGTATTGGAGCAT
LOC_Os07g02660
Os.40473.1.S1_at--934--8051Chr07:959608..959632 (25 bp)
GGAGCATGGCTCTTGCAATAATCAG
LOC_Os07g02660
Os.40473.1.S1_at--526--5251Chr07:959568..959592 (25 bp)
GAATCTCTTACTCTATGGTGCATGT
LOC_Os07g02660
Os.40473.1.S1_at--110--411Chr07:959536..959560 (25 bp)
ATGGTCCTTGGCAGAGGGTTGAACC
LOC_Os07g02660
Os.40473.1.S1_at--827--211Chr07:959486..959510 (25 bp)
ATTTGTCCTGAGTATCTTGTGCTTC
LOC_Os07g02660
Os.40473.1.S1_at--16--3871Chr07:959479..959503 (25 bp)
CTGAGTATCTTGTGCTTCTTGATGA
LOC_Os07g02660
Os.40473.1.S1_at--703--7091Chr07:959416..959440 (25 bp)
GTCACACAAACTGTGCTGACAATGA
LOC_Os07g02660
Target Sequence 
AAGATAGCGAACTTTGGAACGACAAAGGCTCTTAGAGTGACCTTACTTACTCAAGAAGCTTATTGGTACTTTTTCAAGTT
GCGCACATTTGGAAGCACAGATGCAGCGGAGCACCCAAAGATGGCATCCATAGCAATGGATATAGCCATTGAATTGAATG
GGTGCTTCATGGGTTCAAGTATCTACACTCTACTTTTGAGAGCAAATTTCAACGCTCAGTATTGGAGCATGGCTCTTGCA
ATAATCAGAAAATTCAGAAAGCTGAATCTCTTACTCTATGGTGCATGTTTTTTTGATGGTCCTTGGCAGAGGGTTGAACC
GGCATATGTTAGGAGGGTAAACAAAATTTGTCCTGAGTATCTTGTGCTTCTTGATGACTATAAAATATGTTCTGGTCAAA
ACAACATAGTTCATTGTCACACAAACTGTGCTGACAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis