Browse Element(s) Details


Os.41701.1.S1_x_at

Description gb:NM_192073.1
DB_XREF= gi:34911229
GEN=P0445E10.13
TID=Os.41701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445E10.13 (P0445E10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0445E10.13 (P0445E10.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g490609/11Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g491103/11protein prenyltransferase alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49010Os.54277.2.S1_s_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010OsAffx.9291.1.S1_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.54277.1.S1_a_at8/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.51891.1.S1_at2/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.47327.1.S1_x_at1/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49020OsAffx.21499.1.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49020OsAffx.21499.2.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49030Os.32753.1.S1_at11/111+28503593..28504604expressed protein
LOC_Os01g49050OsAffx.11524.1.S1_at11/111+28507716..28508525hypothetical protein
LOC_Os01g49050OsAffx.11074.1.S1_s_at1/111+28507716..28508525hypothetical protein
LOC_Os01g49060Os.6811.1.S1_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.6811.1.S1_s_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.41701.1.S1_x_at9/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.33918.1.S1_x_at6/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.53602.1.S1_at1/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49070NANA1+28524828..28525142hypothetical protein
LOC_Os01g49080OsAffx.11525.1.S1_at7/111+28535960..28537802hypothetical protein
LOC_Os01g49080OsAffx.29394.1.S1_s_at1/111+28535960..28537802hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41701.1.S1_x_at--755--1331Chr01:28519698..28519722 (25 bp)
AGAGTGTGCTGCAGGCACATCGCTG
LOC_Os01g49060
Os.41701.1.S1_x_at--299--6051Chr01:28519744..28519768 (25 bp)
GAGATATACCTCCTGTCAGACTGCC
LOC_Os01g49060
Os.41701.1.S1_x_at--1129--3011Chr01:28519771..28519795 (25 bp)
AATGCCCCTGCCGATGAATTTGGTG
LOC_Os01g49060
Os.41701.1.S1_x_at--153--7771Chr01:28519792..28519816 (25 bp)
GGTGAGGCATGTGTCCAATCTGAAC
LOC_Os01g49060
Os.41701.1.S1_x_at--1131--7451Chr01:28519802..28519826 (25 bp)
GTGTCCAATCTGAACTTGCAGCCCT
LOC_Os01g49060
Os.41701.1.S1_x_at--327--4552Chr01:28561317..28561341 (25 bp)
GCCCTCTACATTCTCTGGATATCAA
LOC_Os01g49110
Os.41701.1.S1_x_at--871--7932Chr01:28561333..28561452 (25 bp)
GGATATCAAAGCAAGTTCCGGCTGT
LOC_Os01g49110
Os.41701.1.S1_x_at--167--6712Chr01:28561442..28561466 (25 bp)
GTTCCGGCTGTGAAACTAAAGCTGG
LOC_Os01g49110
Os.41701.1.S1_x_at--360--791Chr01:28520022..28520046 (25 bp)
ATGTGTTAGCAAGGGCCTGCCCGGA
LOC_Os01g49060
Os.41701.1.S1_x_at--161--6331Chr01:28520856..28520880 (25 bp)
GATGCAAGCGGCGACGCTATCCTTC
NONE
Os.41701.1.S1_x_at--666--3691Chr01:28520872..28520980 (25 bp)
CTATCCTTCTGTCTTTGCGAGGAGT
NONE
Target Sequence 
AGAGTGTGCTGCAGGCACATCGCTGGTGGATCTCTTCCTAGTCCAGGAGATATACCTCCTGTCAGACTGCCTGAATGCCC
CTGCCGATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCG
GCTGTGAAACTAAAGCTGGAAGAAAGGCTACATTCGTTGGGGAGCCTGGAGGATGTGTTAGCAAGGGCCTGCCCGGAGAG
AAGACGGGGAGGACGAGGGCTGATCGGAGGGGCGACGCAGTCGGAAGAGCGGCTGGGCGAGGGGCGGTGCGATCGAAGGA
GTGGTACGAGTGGCGCAAGGGGCGGAGGAGCGGCGCAAGTGGCCGACGGCGGGAGGCAGCCGGCGGGTGCGGAAGCGGCA
GCGGCGGCCGACGAGCGCGGAGGAGGCAGGCGGCGGCCGACGGACACGGATGCAAGCGGCGACGCTATCCTTCTGTCTTT
GCGAGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41701.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis