Browse Element(s) Details


Os.4174.1.S1_at

Description gb:AY115556.1
DB_XREF= gi:21586456
TID=Os.4174.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4174 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) MADS-box protein FDRMADS3 mRNA, complete cds.
PROD=MADS-box protein FDRMADS3
FL= gb:AK069122.1 gb:AY551925.1 gb:AY115556.1 gb:AB003326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0207010/11Agamous-like MADS box protein AGL12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02030Os.19547.1.S1_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030Os.19547.1.S1_x_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030OsAffx.16783.1.S1_x_at2/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02050Os.14853.1.S1_at10/118+655822..661212protein kinase family protein, putative, expressed
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02110Os.52833.1.S1_at11/118+690833..692229Peroxidase 47 precursor, putative, expressed
LOC_Os08g02120Os.12780.1.S1_at11/118+694902..697658Fructokinase, putative, expressed
LOC_Os08g02130Os.6320.1.S1_at10/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130Os.54405.1.S1_at2/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.21108.1.S1_x_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.8723.1.S1_at1/118+698212..707503RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010076biological_processmaintenance of floral meristem identity
GO:0045941biological_processpositive regulation of transcription
GO:0048440biological_processcarpel development
GO:0048441biological_processpetal development
GO:0048442biological_processsepal development
GO:0048443biological_processstamen development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4174.1.S1_at--197--9131Chr08:673604..674049 (25 bp)
TGCGGCGACCAGAGAATGGACCCAA
LOC_Os08g02070
Os.4174.1.S1_at--345--2251Chr08:674077..674101 (25 bp)
AAATCAATCTACTGCAGAAGGGCCT
LOC_Os08g02070
Os.4174.1.S1_at--795--2871Chr08:674094..674517 (25 bp)
AAGGGCCTGAGGTACATCTATGGGA
LOC_Os08g02070
Os.4174.1.S1_at--270--5371Chr08:674544..674568 (25 bp)
GAAGAGCTGAATGCCCTAGAGAGGT
LOC_Os08g02070
Os.4174.1.S1_at--615--831Chr08:674579..674603 (25 bp)
ATGGATGTACAACATTCGCTCCGCA
LOC_Os08g02070
Os.4174.1.S1_at--370--5551Chr08:674822..674846 (25 bp)
GAAAGCTGCTAACGAAATTCTCCAA
LOC_Os08g02070
Os.4174.1.S1_at--786--2971Chr08:674974..674998 (25 bp)
AATGGTCTGATCGACGTAGGCATGA
LOC_Os08g02070
Os.4174.1.S1_at--650--7591Chr08:675019..675043 (25 bp)
GGGCATTTTAGTACAGTCCCACTGT
LOC_Os08g02070
Os.4174.1.S1_at--173--5371Chr08:675046..675070 (25 bp)
GAAGAGATCACTAACCCACTGACTA
LOC_Os08g02070
Os.4174.1.S1_at--1136--5691Chr08:675066..675090 (25 bp)
GACTATACTGAGTGGCTATTCTACT
LOC_Os08g02070
Os.4174.1.S1_at--402--8311NONE
GGCTCGGAGAATGGGCTATTCCTTC
NONE
Target Sequence 
TGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAG
GTACATCTATGGGAACAGGGCAAATGAACACATGACNGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGA
TGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAA
GCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACA
GAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTA
GGGGCTCGGAGAATGGGCTATTCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis