Browse Element(s) Details


Os.44516.1.S1_x_at

Description gb:CF326413
DB_XREF= gi:33801081
DB_XREF=JMT1--05-P21.g1
CLONE=JMT1--05-P21
TID=Os.44516.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phytochrome interacting factor 4 (OJ1351_C05.28), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0501011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein
LOC_Os07g05040Os.5363.1.S1_at11/117+2221229..2223216cadmium-induced protein, putative, expressed
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44516.1.S1_x_at--830--1271Chr07:2207007..2207031 (25 bp)
AGATCCCTTCTCCAGCTATGAATGC
LOC_Os07g05010
Os.44516.1.S1_x_at--839--651Chr07:2207028..2207052 (25 bp)
ATGCACCCAGTGTTCCAGACGATAT
LOC_Os07g05010
Os.44516.1.S1_x_at--758--5251Chr07:2207056..2207080 (25 bp)
GAATGATAATCGCATCCGCGGGCCA
LOC_Os07g05010
Os.44516.1.S1_x_at--401--5591Chr07:2207082..2207106 (25 bp)
GAAATCCTTTTCTTCATTGCAATGA
LOC_Os07g05010
Os.44516.1.S1_x_at--312--3391Chr07:2207207..2207227 (21 bp)
CAGCTCAGGTGCCAGGTTTGTTTAC
LOC_Os07g05010
Os.44516.1.S1_x_at--293--6571Chr07:2207258..2207282 (25 bp)
GATTCAGGAGTTACTCTCTGGCGCT
LOC_Os07g05010
Os.44516.1.S1_x_at--853--7131Chr07:2207283..2207307 (25 bp)
GTCATTCCATCCTCATCTGATGGGA
LOC_Os07g05010
Os.44516.1.S1_x_at--196--1211Chr07:2208210..2208234 (25 bp)
AGTTTGTGTCCTGTGAGTCGTGTAA
LOC_Os07g05010
Os.44516.1.S1_x_at--158--2951Chr07:2208233..2208257 (25 bp)
AAGGCTGAAGCTTTGGGACACCACT
LOC_Os07g05010
Os.44516.1.S1_x_at--1080--4451Chr07:2208280..2208304 (25 bp)
GCCTCCTGATGCTATTCTTATCTGA
LOC_Os07g05010
Os.44516.1.S1_x_at--393--3271Chr07:2208318..2208342 (25 bp)
CAACATCACCTTTCTGTTTCTGGAA
LOC_Os07g05010
Target Sequence 
AGATCCCTTCTCCAGCTATGAATGCACCCAGTGTTCCAGACGATATGCAGAATGATAATCGCATCCGCGGGCCAAGAAAT
CCTTTTCTTCATTGCAATGATACACTGACAGCAACAGCTCAGGTGCCAGGTTTGTTTACCTATGGATCTCAAATTGCAGA
ACAAAATGAGATTCAGGAGTTACTCTCTGGCGCTGTCATTCCATCCTCATCTGATGGGACCATAAAATAANNNNNNNNNN
NNNNNNTGACCAACATGCAAACAACTAGGGGAGATAAACAAAGGAAGGCAGAACAACTGGTCCTAGAAGAATGATTTGNT
TCCAAGATGCAGTTTGTGTCCTGTGAGTCGTGTAAGGCTGAAGCTTTGGGACACCACTCGGCAGTCGACACGTGTACACC
GCCTCCTGATGCTATTCTTATCTGAAGAGTATAGTGATCAACATCACCTTTCTGTTTCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44516.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis