Browse Element(s) Details


Os.46493.2.S1_x_at

Description gb:NM_196222.1
DB_XREF= gi:37533803
TID=Os.46493.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0091O09.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0091O09.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2437010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24310OsAffx.16111.1.S1_at11/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_at6/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_x_at4/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22699.1.S1_x_at2/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22896.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310Os.51348.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24320NANA10+12129267..12130807hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_x_at11/1110+12131141..12131983hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_at8/1110+12131141..12131983hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_at9/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_x_at8/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_at7/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_x_at4/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.3.S1_at3/1110+12142372..12143487hypothetical protein
LOC_Os10g24340Os.4760.1.S1_at1/1110+12142372..12143487hypothetical protein
LOC_Os10g24350OsAffx.8183.1.S1_at11/1110+12144589..12145302transposon protein, putative, unclassified
LOC_Os10g24360OsAffx.20409.1.S1_at11/1110+12147842..12148734hypothetical protein
LOC_Os10g24360OsAffx.23458.1.S1_x_at1/1110+12147842..12148734hypothetical protein
LOC_Os10g24370Os.46493.2.S1_x_at10/1110+12149339..12156009expressed protein
LOC_Os10g24370Os.3577.1.S1_x_at1/1110+12149339..12156009expressed protein
LOC_Os10g24380NANA10+12157106..12159806hypothetical protein
LOC_Os10g24390OsAffx.20408.1.S1_at10/1110+12166429..12167286hypothetical protein
LOC_Os10g24400OsAffx.203.1.S1_at11/1110+12173621..12180121retrotransposon protein, putative, unclassified
LOC_Os10g24400Os.53111.1.S1_at1/1110+12173621..12180121retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46493.2.S1_x_at--1161--471Chr10:12150533..12150557 (25 bp)
ATCTGGAGGTGCATGCCACTCGAAT
LOC_Os10g24370
Os.46493.2.S1_x_at--814--7631Chr10:12150506..12150530 (25 bp)
GGGACGTTATCCAGTATGCCGGCTC
LOC_Os10g24370
Os.46493.2.S1_x_at--89--2611Chr10:12150451..12150475 (25 bp)
AACGCTTGTGCTGTCGACTGTTTAC
LOC_Os10g24370
Os.46493.2.S1_x_at--616--5731NONE
GACTGTTTACGAGATTGCATATGGT
NONE
Os.46493.2.S1_x_at--190--5271Chr10:12149690..12149714 (25 bp)
GAATCCTGACGATGGAGCTTCATGT
LOC_Os10g24370
Os.46493.2.S1_x_at--463--2391Chr10:12149647..12149671 (25 bp)
AAACTCCGCAATGGTGGCATCGTCG
LOC_Os10g24370
Os.46493.2.S1_x_at--733--291Chr10:12149580..12149604 (25 bp)
ATAGCCTGGTCGAGCTGACATGCCA
LOC_Os10g24370
Os.46493.2.S1_x_at--641--251Chr10:12149556..12149580 (25 bp)
ATATCCTCGTGATCGCAGCGTTATC
LOC_Os10g24370
Os.46493.2.S1_x_at--65--2871Chr10:12149488..12149512 (25 bp)
AAGTGCTCCTCCTATGATCGGTGCA
LOC_Os10g24370
Os.46493.2.S1_x_at--382--6991Chr10:12149405..12149429 (25 bp)
GTACGTTGAGCCGAAAGTCCCTGAC
LOC_Os10g24370
Os.46493.2.S1_x_at--1135--9791Chr10:12149375..12149399 (25 bp)
TAACCTGATGGTTCTTGGGCCCTGC
LOC_Os10g24370
Target Sequence 
ATCTGGAGGTGCATGCCACTCGAATGGGGGACGTTATCCAGTATGCCGGCTCCAAGCTCCCCTCCGCCGCGCTGAATCTC
GAAACGCTTGTGCTGTCGACTGTTTACGAGATTGCATATGGTATCAGATGGTACAACGACCAGAACCGTGGGAATCCTGA
CGATGGAGCTTCATGTAGGGGGCGGGAGGCCAGCAAACTCCGCAATGGTGGCATCGTCGGCAACCTGAGGAAGGTGACCA
TCACCGGTTTCTGCTCGGCGAATAGCCTGGTCGAGCTGACATGCCATATCCTCGTGATCGCAGCGTTATCGCTCGAACAC
CTGACGCTTGACACCTCCCCTGGTTACGACAGGAAGTGCTCCTCCTATGATCGGTGCAGGAAGATGAGTACAGAGGCTCT
CCGGGAGGCCGAGACAGCCCTCGCCGCTGCAAGGAAGTACGTTGAGCCGAAAGTCCCTGACAGCGTTAACCTGATGGTTC
TTGGGCCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46493.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis