Browse Element(s) Details


Os.46831.2.S1_x_at

Description gb:NM_197094.1
DB_XREF= gi:37535547
TID=Os.46831.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0049A16.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029C15.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g346029/11csAtPR5, putative, expressed
LOC_Os10g346141/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46831.2.S1_x_at--603--7751Chr10:18116265..18116289 (25 bp)
GGTGAACTGACGACGCGTCTTCGGT
NONE
Os.46831.2.S1_x_at--615--5371Chr10:18116309..18116550 (25 bp)
GAAGAAAATTCGTACTCCAATGGAG
NONE
Os.46831.2.S1_x_at--287--1671Chr10:18116660..18116684 (25 bp)
AGCCGAGCCGGAAGAAGCGAGACCC
LOC_Os10g34602
Os.46831.2.S1_x_at--1136--3971Chr10:18116690..18116714 (25 bp)
CGGTGTCGCGCTTCAAGCAGCGGTC
LOC_Os10g34602
Os.46831.2.S1_x_at--762--5292Chr10:18121885..18121909 (25 bp)
GAAGGTCGCGGAGCATCCCGACGTC
LOC_Os10g34614
Os.46831.2.S1_x_at--159--531Chr10:18116800..18116824 (25 bp)
ATCGACGCGAGCTCGTATCGCAAGG
LOC_Os10g34602
Os.46831.2.S1_x_at--1017--10131Chr10:18116815..18116839 (25 bp)
TATCGCAAGGATTGGGACTACGTCT
LOC_Os10g34602
Os.46831.2.S1_x_at--706--7631Chr10:18116828..18116852 (25 bp)
GGGACTACGTCTGGAGCCAAGCCTA
LOC_Os10g34602
Os.46831.2.S1_x_at--611--3711Chr10:18116850..18116874 (25 bp)
CTACGGCTCCTTCGACAAAATCAGT
LOC_Os10g34602
Os.46831.2.S1_x_at--301--411Chr10:18116869..18116893 (25 bp)
ATCAGTCAGTCACTAGTCGATCTTG
LOC_Os10g34602
Os.46831.2.S1_x_at--95--10071Chr10:18116882..18116906 (25 bp)
TAGTCGATCTTGATCCCCTTTTCAT
LOC_Os10g34602
Target Sequence 
GGTGAACTGACGACGCGTCTTCGGTGGACGGAGTGGTATGGAACGAAGAAAATTCGTACTCCAATGGAGAAGGACAAGGT
GCAGGAGGAGGCGGGGATCGAGACGAGGGAGGAGGACGACGACGAGTCCGGGACGAAGAGAGAGCGCGAATCAGGGGAGA
TCGAAGGAGGCGGAGGAGAGCCGAGCCGGAAGAAGCGAGACCCCGAGGCGGTGTCGCGCTTCAAGCAGCGGTCGGCGGCG
TGGTTCGCCAAGCTCAAGGAGGAGTTCGAGAGGAAGGTCGCGGAGCATCCCGACGTCGACTGGTCCGACTCGCTGGCCAT
CGACGCGAGCTCGTATCGCAAGGATTGGGACTACGTCTGGAGCCAAGCCTACGGCTCCTTCGACAAAATCAGTCAGTCAC
TAGTCGATCTTGATCCCCTTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46831.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis