Browse Element(s) Details


Os.48015.1.A1_at

Description gb:NM_186696.1
DB_XREF= gi:34900477
GEN=OSJNBa0061L20.18
TID=Os.48015.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48015 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OSJNBa0061L20.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OSJNBa0061L20.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g130009/11retrotransposon protein, putative, unclassified
LOC_Os11g143405/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g230804/11retrotransposon protein, putative, unclassified
LOC_Os03g417104/11retrotransposon protein, putative, unclassified
LOC_Os11g279504/11retrotransposon protein, putative, unclassified
LOC_Os08g125403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g226201/11retrotransposon protein, putative, unclassified
LOC_Os07g163601/11retrotransposon protein, putative, unclassified
LOC_Os11g220601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g171801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12950OsAffx.10155.1.S1_at3/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950Os.41248.4.S1_x_at2/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.15069.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.10155.1.S1_x_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.20187.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.380.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12959NANA7+7436149..7437641NA
LOC_Os07g12970NANA7+7439810..7443009hypothetical protein
LOC_Os07g12980OsAffx.22699.1.S1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.8279.1.S1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12990OsAffx.29755.1.S1_s_at11/117+7450746..7451786hypothetical protein
LOC_Os07g13000Os.10731.1.A1_a_at11/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.1.S1_at10/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000Os.48015.1.A1_at9/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000Os.48015.1.A1_x_at6/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.5.S1_x_at4/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.3.S1_x_at2/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.3.S1_s_at1/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13010OsAffx.29755.3.S1_x_at6/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.4.S1_x_at5/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.5.S1_x_at5/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010Os.44324.1.A1_at4/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.2.S1_x_at4/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13020OsAffx.30941.9.S1_x_at11/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.1.S1_x_at8/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.5.S1_x_at7/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.2.S1_x_at5/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13030OsAffx.28427.2.S1_x_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.2.S1_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.1.S1_x_at4/117+7472608..7474077hypothetical protein
LOC_Os07g13040OsAffx.5308.1.S1_at10/117+7474489..7478034hypothetical protein
LOC_Os07g13050OsAffx.28426.1.S1_at7/117+7481244..7482256hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48015.1.A1_at--189--101921Chr12:9917287..9917311 (25 bp)
TATAGTGTGCCAGACTGTGAAGTGG
NONE
Os.48015.1.A1_at--265--10811NONE
TTGTGGGTACAGTGAATTCTTTGCA
NONE
Os.48015.1.A1_at--605--51321Chr11:8047090..8047114 (25 bp)
GCAAATCATTTTATCATCCTCTCCC
LOC_Os11g14340
Os.48015.1.A1_at--285--22723Chr11:8047092..8047116 (25 bp)
AAATCATTTTATCATCCTCTCCCCT
LOC_Os11g14340
Os.48015.1.A1_at--356--93120Chr12:11445870..11445894 (25 bp)
TCCCCTCCTGCTTTCAACTTGAGTA
NONE
Os.48015.1.A1_at--285--10311Chr07:7456802..7456826 (25 bp)
TTTCAACTTGAGTAGCTCTAAGACA
LOC_Os07g13000
Os.48015.1.A1_at--245--6971Chr07:7456791..7456815 (25 bp)
GTAGCTCTAAGACATTGGAACTTGA
LOC_Os07g13000
Os.48015.1.A1_at--262--8512Chr04:2307901..2307925 (25 bp)
TGGAACTTGAAGACGCCAATGAGGT
NONE
Os.48015.1.A1_at--261--58113Chr12:11445923..11445947 (25 bp)
GACGCCAATGAGGTCTACTTATGGA
NONE
Os.48015.1.A1_at--181--6079Chr12:11445932..11445956 (25 bp)
GAGGTCTACTTATGGAGGTCAGTCA
NONE
Os.48015.1.A1_at--1072--98723Chr12:11445938..11445962 (25 bp)
TACTTATGGAGGTCAGTCAAGTGGA
NONE
Target Sequence 
TATAGTGTGCCAGACTGTGAAGTGGCGAGAAGTCCATGGGGGTCGCTGGGGAGTCCATGCCTCTGGTTGTAGAGGGGGTG
ATTATGATCCAGGAATGGTGCACTGTGNTGAGTTGTGTTATGCAGAGGGTATTGTCACAGCCTCTATTCNGGTACTTTCC
AGTATCGCGACGCATGGTAGACATGATGTTGAGGCTGTGTCTTGTGGGTACAGTGAATTCTTTGCAAATCATTTTATCAT
CCTCTCCCCTCCTGCTTTCAACTTGAGTAGCTCTAAGACATTGGAACTTGAAGACGCCAATGAGGTCTACTTATGGAGGT
CAGTCAAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48015.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis