Browse Element(s) Details


Os.49288.1.S1_at

Description gb:AK064845.1
DB_XREF= gi:32974863
TID=Os.49288.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000G09, full insert sequence.
FL= gb:AK064845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5308010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53020Os.27345.1.S1_at1/112+32442024..32445412transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g53030Os.57338.1.S1_at11/112+32448682..32450136expressed protein
LOC_Os02g53040Os.49384.1.A1_at11/112+32452944..32458454Protein kinase domain containing protein, expressed
LOC_Os02g53050Os.27200.2.S1_x_at11/112+32456784..32458759pentatricopeptide, putative, expressed
LOC_Os02g53060Os.3707.1.S1_at10/112+32459132..32462724Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os02g53070Os.48041.1.A1_at11/112+32463693..32466789CPR5 protein, putative, expressed
LOC_Os02g53080Os.49288.1.S1_at10/112+32468196..32470259expressed protein
LOC_Os02g53080Os.40295.1.S1_at3/112+32468196..32470259expressed protein
LOC_Os02g53080OsAffx.8265.1.A1_x_at1/112+32468196..32470259expressed protein
LOC_Os02g53090Os.51841.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090OsAffx.21755.1.S1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53090Os.45902.1.A1_x_at1/112+32477526..32481145hypothetical protein
LOC_Os02g53100OsAffx.12620.1.S1_at11/112+32482962..32485490WRKY DNA binding domain containing protein, expressed
LOC_Os02g53110Os.9723.1.S1_a_at11/112+32489363..32493246expressed protein
LOC_Os02g53120Os.54699.1.A1_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120OsAffx.25595.1.S1_x_at11/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.51572.1.S1_x_at3/112+32493344..32501282separase, putative, expressed
LOC_Os02g53120Os.50196.1.S1_x_at1/112+32493344..32501282separase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49288.1.S1_at--370--5292Chr10:9500829..9500849 (21 bp)
GACAAGTTTGGTTTTTTCGAATCTG
NONE
Os.49288.1.S1_at--519--6632Chr10:9500866..9500890 (25 bp)
GTTGTGTCCACATAGGATAGCCCTT
NONE
Os.49288.1.S1_at--109--1011Chr02:32468645..32468669 (25 bp)
AGGATAGCCCTTTTATGATGATAAC
LOC_Os02g53080
Os.49288.1.S1_at--3--7471Chr02:32468557..32468581 (25 bp)
GTGTGAAGTTCAACAGCTCTATTGT
LOC_Os02g53080
Os.49288.1.S1_at--55--9891Chr02:32468512..32468536 (25 bp)
TACTTGCAAGAGTTGTACTGCTTCT
LOC_Os02g53080
Os.49288.1.S1_at--219--7011Chr02:32468498..32468522 (25 bp)
GTACTGCTTCTATATCACACTGTCT
LOC_Os02g53080
Os.49288.1.S1_at--944--2171Chr02:32468482..32468506 (25 bp)
ACACTGTCTAAGTCTTAACCGCAAG
LOC_Os02g53080
Os.49288.1.S1_at--444--4872Chr08:3750083..3750107 (25 bp)
GCTATGGCTGCAGCGGATAATCAAT
NONE
Os.49288.1.S1_at--1067--10631Chr02:32468419..32468443 (25 bp)
TTCCCAAATGCCGATGGATTGCTAC
LOC_Os02g53080
Os.49288.1.S1_at--322--72Chr07:19091048..19091072 (25 bp)
ATTGCTACCAGAGGGACCGGAGGAA
NONE
Os.49288.1.S1_at--1041--1051NONE
AGGGAGGTCCCTGTCTTTCTATTTG
NONE
Target Sequence 
GACAAGTTTGGTTTTTTCGAATCTGAAGATATCAAATGTTGTGTCCACATAGGATAGCCCTTTTATGATGATAACACAAA
TGCAGATCCCCCAAGTTTGTTTGAATGCATGCAAACAAACTTGTAAAATGGATAATAAGTGTGAAGTTCAACAGCTCTAT
TGTATTTTTACTTGCTCTGTTTTTACTTGCAAGAGTTGTACTGCTTCTATATCACACTGTCTAAGTCTTAACCGCAAGAT
TTCTTTGCTATGGCTGCAGCGGATAATCAATTGATATTCCCAAATGCCGATGGATTGCTACCAGAGGGACCGGAGGAAGG
CGAAGCCAGATTGATTAGTGATATAGTCCTGAAAAGAATGTGCTTAATCCTGAAATATATTACTGTTCATGCTTAACTAG
ATAGAAATATGCATGATGTTCTNAATTCTGATGAATGATGACAGCAACTGAATATGGTGAAGAATTGTCCTGATGCNATT
CAGGGAGGTCCCTGTCTTTCTATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis