Browse Element(s) Details


Os.49427.1.S1_x_at

Description gb:AK120049.1
DB_XREF= gi:37989672
TID=Os.49427.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000A07, full insert sequence.
FL= gb:AK120049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0369011/11Glycosyl hydrolase family 14 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03650OsAffx.24085.1.S1_at10/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.31040.1.S1_at5/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.26303.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.4302.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03660OsAffx.24086.1.S1_at11/112+1524951..1526174F-box domain containing protein
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49427.1.S1_x_at--640--10031Chr02:1546405..1546429 (25 bp)
TAGAGAGTGCTCTTCCATGTCTTGA
LOC_Os02g03690
Os.49427.1.S1_x_at--984--6351Chr02:1546448..1546472 (25 bp)
GATCCTTGACACAGCGAAGCCTAGG
LOC_Os02g03690
Os.49427.1.S1_x_at--708--5411Chr02:1546463..1546487 (25 bp)
GAAGCCTAGGCATGATCCTGACCGT
LOC_Os02g03690
Os.49427.1.S1_x_at--661--751Chr02:1546492..1546516 (25 bp)
ATGTCTCGTTCTTTGCATACCGTCA
LOC_Os02g03690
Os.49427.1.S1_x_at--1080--9951Chr02:1546519..1546543 (25 bp)
TACCCTCATTCCTTTTGCAGAGAGA
LOC_Os02g03690
Os.49427.1.S1_x_at--821--1391Chr02:1546541..1546565 (25 bp)
AGACGTTTGCTTCTCAGAGCTTGGC
LOC_Os02g03690
Os.49427.1.S1_x_at--410--7911Chr02:1546979..1547003 (25 bp)
GGTTGAATTCCCTAGTTGCATTATA
LOC_Os02g03690
Os.49427.1.S1_x_at--578--5551Chr02:1547032..1547056 (25 bp)
GAAAGGAGCTTGGTTTGGACCCCAG
LOC_Os02g03690
Os.49427.1.S1_x_at--1027--7811Chr02:1547269..1547293 (25 bp)
GGTCACAAATGTTAATCCCTTTCTG
LOC_Os02g03690
Os.49427.1.S1_x_at--86--4191Chr02:1547285..1547309 (25 bp)
CCCTTTCTGGGATGTAATTTTCTGA
LOC_Os02g03690
Os.49427.1.S1_x_at--41--7911Chr02:1547311..1547335 (25 bp)
GGTTCTGTGTGAAATACCCGCGGAA
LOC_Os02g03690
Target Sequence 
TAGAGAGTGCTCTTCCATGTCTTGATGGTGAGATGTACTCACAGATCCTTGACACAGCGAAGCCTAGGCATGATCCTGAC
CGTCACCATGTCTCGTTCTTTGCATACCGTCAGCTACCCTCATTCCTTTTGCAGAGAGACGTTTGCTTCTCAGAGCTTGG
CAACTTTGTCAAGTGTATGCACGGGGAGGCTACCCAGATTGTGGAAGGTTGAATTCCCTAGTTGCATTATATGCACATAG
GTTTTGAAACAAGATTAAAGAAAGGAGCTTGGTTTGGACCCCAGAAACCGTCGATGCCCGCGGCGAAATCTGCTGCGCGA
TTGTTGTAAAGCTTCTGTTGTGGGTTTTGGAGGNGGTAAGTACGGCTCAAGGCAGGATAATAATAGCTTAGCAACTCTTT
TTTTTTTNCCGNGGAATGGNATGAATTTNAACATCAGAGAAAATGACGNGCTGNACATTNGNNTACAACCNTNNTAGAAT
AGAAATATTGNCCNNTATTTAGGTCACAAATGTTAATCCCTTTCTGGGATGTAATTTTCTGATGGTTCTGTGTGAAATAC
CCGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49427.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis