Browse Element(s) Details


Os.49580.1.S1_at

Description gb:AK112053.1
DB_XREF= gi:37988716
TID=Os.49580.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-B04, full insert sequence.
FL= gb:AK112053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1930411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19270OsAffx.19743.1.S1_at11/1112+11168735..11170567hypothetical protein
LOC_Os12g19280OsAffx.19744.1.S1_at11/1112+11171928..11173479hypothetical protein
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49580.1.S1_at--271--1591Chr12:11199440..11199464 (25 bp)
AGCTCGATCCAGATGTGGGCGTTGA
LOC_Os12g19304
Os.49580.1.S1_at--637--6011Chr12:11199400..11199424 (25 bp)
GAGAGAATCGCTATATTTGGCTGAA
LOC_Os12g19304
Os.49580.1.S1_at--759--10851Chr12:11199384..11199408 (25 bp)
TTGGCTGAAACATGCTCGCTTTGGC
LOC_Os12g19304
Os.49580.1.S1_at--72--4891Chr12:11199367..11199391 (25 bp)
GCTTTGGCGCATCATCCATATTTGG
LOC_Os12g19304
Os.49580.1.S1_at--374--10851Chr12:11199346..11199370 (25 bp)
TTGGCGGAAACATGCCGTATCTGCT
LOC_Os12g19304
Os.49580.1.S1_at--899--6891Chr12:11199330..11199354 (25 bp)
GTATCTGCTGGAGGCCCATTTTCAC
LOC_Os12g19304
Os.49580.1.S1_at--562--1751Chr12:11199307..11199331 (25 bp)
ACCTCCCGTACACCATCATATGATG
LOC_Os12g19304
Os.49580.1.S1_at--720--611Chr12:11199267..11199291 (25 bp)
ATGCTCCAATATGTTAGATACCCTG
LOC_Os12g19304
Os.49580.1.S1_at--241--151Chr12:11199238..11199262 (25 bp)
ATTACGGTTGTGACTTTGTTGTACA
LOC_Os12g19304
Os.49580.1.S1_at--1049--5571Chr12:11199208..11199232 (25 bp)
GAAATACCTCCTGTAAAGCTATGTA
LOC_Os12g19304
Os.49580.1.S1_at--861--1411Chr12:11199165..11199189 (25 bp)
AGAAATACCATAAATTCCCTTCATT
LOC_Os12g19304
Target Sequence 
AGCTCGATCCAGATGTGGGCGTTGAGATATGGTGTGAGGAGAGAGAATCGCTATATTTGGCTGAAACATGCTCGCTTTGG
CGCATCATCCATATTTGGCGGAAACATGCCGTATCTGCTGGAGGCCCATTTTCACCTCCCGTACACCATCATATGATGGA
GGATCTCCTGGGGATGCTCCAATATGTTAGATACCCTGAATAATTACGGTTGTGACTTTGTTGTACATAATAGAAATACC
TCCTGTAAAGCTATGTATTTCAACAAATGTAAAATAGAAATACCATAAATTCCCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis