Browse Element(s) Details


Os.49725.1.S1_at

Description gb:AK105746.1
DB_XREF= gi:32990955
TID=Os.49725.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B06, full insert sequence.
FL= gb:AK105746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g590106/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58970Os.46109.1.S1_at9/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58970Os.9147.1.S1_s_at1/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58980Os.56777.1.S1_at11/114+34867711..34870227IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os04g58990Os.52632.1.S1_at10/114+34870390..34872153Protein kinase domain containing protein, expressed
LOC_Os04g59000Os.17144.1.A1_at9/114+34872938..34879210protein kinase family protein, putative, expressed
LOC_Os04g59010Os.49725.1.S1_at6/114+34886434..34887682Kelch motif family protein, expressed
LOC_Os04g59020Os.27945.1.A1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_x_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020OsAffx.26662.1.S1_at11/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59020Os.27945.1.A1_at9/114+34892400..34893173Integral membrane protein, expressed
LOC_Os04g59030OsAffx.28370.3.S1_at10/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_at5/114+34895772..34897039hypothetical protein
LOC_Os04g59030OsAffx.28370.1.S1_x_at2/114+34895772..34897039hypothetical protein
LOC_Os04g59040Os.9831.1.S1_at10/114+34901612..34905046Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os04g59050Os.51110.1.S1_at11/114+34907912..34909325expressed protein
LOC_Os04g59050OsAffx.18607.1.S1_x_at1/114+34907912..34909325expressed protein
LOC_Os04g59060Os.18273.1.S1_at11/114+34909581..34913534DnaJ domain containing protein, expressed
LOC_Os04g59060OsAffx.30143.1.S1_at1/114+34909581..34913534DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49725.1.S1_at--419--9951Chr04:34886741..34886765 (25 bp)
TACGCCTAGATCTGGCCACCATGGA
LOC_Os04g59010
Os.49725.1.S1_at--708--591Chr04:34886697..34886721 (25 bp)
ATGCCTCCCAATATGTACCGTTGCT
LOC_Os04g59010
Os.49725.1.S1_at--592--2131Chr04:34886647..34886671 (25 bp)
ACAGGGTAATGCCATGCCTACTGCT
LOC_Os04g59010
Os.49725.1.S1_at--533--3451Chr04:34886467..34886491 (25 bp)
CAGTGATGGCGTATACCGTGGCTTT
LOC_Os04g59010
Os.49725.1.S1_at--843--311Chr04:34886455..34886479 (25 bp)
ATACCGTGGCTTTGTGTTCGATGGT
LOC_Os04g59010
Os.49725.1.S1_at--897--10611Chr04:34886439..34886463 (25 bp)
TTCGATGGTGGGTTCACTGCTATGC
LOC_Os04g59010
Os.49725.1.S1_at--30--1991Chr04:34886424..34886448 (25 bp)
ACTGCTATGCCCTGAAGTCTATGGA
NONE
Os.49725.1.S1_at--449--5971Chr04:34886401..34886425 (25 bp)
GAGAACACATACCAGTCCGGTGCGT
NONE
Os.49725.1.S1_at--295--6571Chr04:34886345..34886369 (25 bp)
GATTCGGGACATCTATCCATTGCAT
NONE
Os.49725.1.S1_at--77--4951Chr04:34886286..34886310 (25 bp)
GCATTGTACTTGGTTCGTAGCATCA
NONE
Os.49725.1.S1_at--225--3671Chr04:34886211..34886235 (25 bp)
CTTTTCAGGGTTTGTTGCTTCAGAC
NONE
Target Sequence 
TACGCCTAGATCTGGCCACCATGGAGTGGGACGAAGCTGGCCGCATGCCTCCCAATATGTACCGTTGCTTCACCGGCCTC
TGTGAGGCTGCTGCACAGGGTAATGCCATGCCTACTGCTGTTGCTGGTGGCAACAACAAGGTCAAGGTGTTTGGCGGTGA
TGGCAAGGTGTGGTTTGCTGGAAAGCGGGTGCGAGGGAAGCTGGCAANGTGGGAGGAGGATGAGCTAGGCAACAGCGGTG
GCAAGTGGGACTGGGTTGATGGTGTTCCTGGGTACAGTGATGGCGTATACCGTGGCTTTGTGTTCGATGGTGGGTTCACT
GCTATGCCCTGAAGTCTATGGAGAACACATACCAGTCCGGTGCGTGACTAAATGCNCNNTNANGNTAAGATTTTAATTGA
TTCGGGACATCTATCCATTGCATGCAGGGGGAATTGACATGTCAAAGAATTTTATTTGCATTGTACTTGGTTCGTAGCAT
CATGAGATACTTTCAATTGCTGTACTTGTTAAAAGTGAAATGTTTTAAATATCTTTTCAGGGTTTGTTGCTTCAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis