Browse Element(s) Details


Os.50461.2.S1_at

Description gb:AK121289.1
DB_XREF= gi:37990912
TID=Os.50461.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109C11, full insert sequence.
FL= gb:AK121289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1046911/11Glycosyl hydrolase family 10 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10490OsAffx.15996.1.S1_x_at1/113+5321437..5323509retrotransposon protein, putative, LINE subclass, expressed
LOC_Os03g10500OsAffx.3187.1.S1_s_at11/113+5324431..5325964adenosine-5'-phosphosulfate kinase, putative
LOC_Os03g10510Os.6631.1.S1_at11/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10510Os.12160.1.S1_at1/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10520Os.24626.1.A1_at10/113+5332059..5336398radical SAM enzyme, Cfr family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50461.2.S1_at--537--9371Chr03:5307128..5307152 (25 bp)
TCGAGCTCAGATCCGGTACGTACTA
LOC_Os03g10469
Os.50461.2.S1_at--197--9011Chr03:5307081..5307105 (25 bp)
TGAATTGTAGGAGCGCCCTAGACTT
LOC_Os03g10469
Os.50461.2.S1_at--930--3691Chr03:5307064..5307088 (25 bp)
CTAGACTTTGCTGCCCACTGGATCA
LOC_Os03g10469
Os.50461.2.S1_at--825--7951Chr03:5307045..5307069 (25 bp)
GGATCAGCAGTCGTTTCCTTGGTCA
LOC_Os03g10469
Os.50461.2.S1_at--377--6831Chr03:5307033..5307057 (25 bp)
GTTTCCTTGGTCACAATGTTGCTAT
LOC_Os03g10469
Os.50461.2.S1_at--554--6671Chr03:5307016..5307040 (25 bp)
GTTGCTATTTTTTCTAGTTCTAGGC
LOC_Os03g10469
Os.50461.2.S1_at--178--6731Chr03:5307000..5307024 (25 bp)
GTTCTAGGCTAATTGCATTGTCACT
LOC_Os03g10469
Os.50461.2.S1_at--843--4931Chr03:5306986..5307010 (25 bp)
GCATTGTCACTTCATTTCCTTCCAT
LOC_Os03g10469
Os.50461.2.S1_at--1058--3071Chr03:5306864..5306888 (25 bp)
AATCAGCACGGTACATAGTTCTCAT
LOC_Os03g10469
Os.50461.2.S1_at--879--10291Chr03:5306833..5306857 (25 bp)
TTTCCTTGTCTACCATCCTTTAATA
LOC_Os03g10469
Os.50461.2.S1_at--1069--2411Chr03:5306799..5306823 (25 bp)
AAAAGGTCGCCTGCTTCCATTTTAG
LOC_Os03g10469
Target Sequence 
TCGAGCTCAGATCCGGTACGTACTAATTAATATGATATGATTTAGTTTGAATTGTAGGAGCGCCCTAGACTTTGCTGCCC
ACTGGATCAGCAGTCGTTTCCTTGGTCACAATGTTGCTATTTTTTCTAGTTCTAGGCTAATTGCATTGTCACTTCATTTC
CTTCCATTTTTTTTAGTGATTCTAGTAACTTTTTTATATATATACGTAGATCCAATGCTTACATTTCATTTGTAACTTGT
AAGGACTCTGTGATGAGAGAATTTAATCAGCACGGTACATAGTTCTCATAAAAACTTTCCTTGTCTACCATCCTTTAATA
AAGGGAAAAAAAAGGTCGCCTGCTTCCATTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50461.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis