Browse Element(s) Details


Os.50567.1.S1_at

Description gb:AK121872.1
DB_XREF= gi:37991495
TID=Os.50567.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033104C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104C13, full insert sequence.
FL= gb:AK121872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1248011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12440OsAffx.25936.7.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.1.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.2.S1_x_at3/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.5.S1_x_at2/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.10827.1.S1_x_at10/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.46055.2.S1_x_at5/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12460OsAffx.18815.1.S1_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12460OsAffx.18815.1.S1_x_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12470Os.55418.1.S1_at11/1111+6964096..6966445expressed protein
LOC_Os11g12480Os.50567.1.S1_at11/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12480OsAffx.12394.1.S1_at1/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12490OsAffx.30941.2.S1_x_at11/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.1.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.9.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.5.S1_x_at7/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12500OsAffx.29755.4.S1_x_at11/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_at10/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_x_at8/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.3.S1_x_at4/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500Os.44324.1.A1_at3/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12510OsAffx.29755.5.S1_x_at11/1111+6986475..6990310hypothetical protein
LOC_Os11g12510OsAffx.29755.1.S1_s_at7/1111+6986475..6990310hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50567.1.S1_at--868--4571Chr11:6971733..6971757 (25 bp)
GCGCTACGACTTTGGAGTTGACAAC
LOC_Os11g12480
Os.50567.1.S1_at--877--7491Chr11:6972223..6972247 (25 bp)
GTGGTGCCCCATTTTTAGCAAGCTA
LOC_Os11g12480
Os.50567.1.S1_at--197--5691Chr11:6972277..6972301 (25 bp)
GACTTCTAATATGTCAGGGCTAGCT
LOC_Os11g12480
Os.50567.1.S1_at--517--3471Chr11:6972291..6972315 (25 bp)
CAGGGCTAGCTTGCCTTCTTGAGCA
LOC_Os11g12480
Os.50567.1.S1_at--1005--10551Chr11:6972306..6972330 (25 bp)
TTCTTGAGCACTCGCCAATTGTAGA
LOC_Os11g12480
Os.50567.1.S1_at--77--9511Chr11:6972340..6972445 (25 bp)
TCTTCAACTTTCTAAGGAACCTCGA
LOC_Os11g12480
Os.50567.1.S1_at--903--2291Chr11:6972577..6972601 (25 bp)
AAATGGTATACCTCTGGCGAAGATT
LOC_Os11g12480
Os.50567.1.S1_at--815--8371Chr11:6972592..6972616 (25 bp)
GGCGAAGATTAACGTCCTACAAACT
LOC_Os11g12480
Os.50567.1.S1_at--261--5991Chr11:6972619..6972643 (25 bp)
GAGACGGCCTAGACGTAAGCTATCT
LOC_Os11g12480
Os.50567.1.S1_at--75--7071Chr11:6972633..6972657 (25 bp)
GTAAGCTATCTACTGTGGTTCACAT
LOC_Os11g12480
Os.50567.1.S1_at--756--3572Chr11:6972744..6972768 (25 bp)
CATTTGTTAAACCTCTTTTCTCTAG
LOC_Os11g12480
Target Sequence 
GCGCTACGACTTTGGAGTTGACAACTGAGTCTAGGGTGTTTATGTTCAGAAGGGATCTGATGTGGTGCCCCATTTTTAGC
AAGCTAAAGACCTTGTTAGTCAATGAGTGGTTCATGACTTCTAATATGTCAGGGCTAGCTTGCCTTCTTGAGCACTCGCC
AATTGTAGAGAAGCTCACTCTTCAACTTTCTAAGGAACCTCGAAATTTTGTGGAAATCGAAGACAGTGACAAGCCATGCA
AACAAGCATTTCTGTTTAAGAACCTCAATATAGTTGAAATCAAATGTCAAGAAGGTGATGAAAGGGTTAAGAAAATTTTA
AAGATCCTGAGTCAAAATGGTATACCTCTGGCGAAGATTAACGTCCTACAAACTAAGAGACGGCCTAGACGTAAGCTATC
TACTGTGGTTCACATAATTCTGTGTTTAGATATATAAGATGTGAATAAATTATCAAGTTAACTAAAAGGTGCATGTCTAA
GAAATGTATTGGTAGCACATACATTTGTTAAACCTCTTTTCTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis