Browse Element(s) Details


Os.50669.1.S1_at

Description gb:AJ490434.1
DB_XREF= gi:27527354
TID=Os.50669.1
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50669 (NCBI UniGene Cluster)
UG_TITLE=Z190 snoRNA
DEF=Oryza sativa z190 snoRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2501011/11Caltractin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24954OsAffx.16407.3.S1_s_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.3.S1_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.27026.1.A1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.2.S1_x_at6/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_at2/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24970OsAffx.18389.1.S1_at11/1110+12523918..12524400hypothetical protein
LOC_Os10g24980OsAffx.17094.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.25548.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.17842.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein
LOC_Os10g25010Os.50669.1.S1_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25010Os.11064.1.S1_a_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25020OsAffx.193.1.S1_x_at8/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020OsAffx.193.1.S1_at2/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020Os.5164.1.S1_at1/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25030Os.5164.1.S1_at11/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_x_at6/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_at1/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25040OsAffx.30524.1.S1_x_at11/1110+12560680..12563012Red chlorophyll catabolite reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009612biological_processresponse to mechanical stimulus
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50669.1.S1_at--932--9991Chr10:12542254..12542278 (25 bp)
TAGCTGAATTTCGTTAGCAACATAT
LOC_Os10g25010
Os.50669.1.S1_at--421--1611Chr10:12542253..12542277 (25 bp)
AGCTGAATTTCGTTAGCAACATATC
LOC_Os10g25010
Os.50669.1.S1_at--679--3851Chr10:12542251..12542275 (25 bp)
CTGAATTTCGTTAGCAACATATCGT
LOC_Os10g25010
Os.50669.1.S1_at--706--5211Chr10:12542249..12542273 (25 bp)
GAATTTCGTTAGCAACATATCGTTT
LOC_Os10g25010
Os.50669.1.S1_at--128--3131Chr10:12542248..12542272 (25 bp)
AATTTCGTTAGCAACATATCGTTTT
LOC_Os10g25010
Os.50669.1.S1_at--1142--191Chr10:12542247..12542271 (25 bp)
ATTTCGTTAGCAACATATCGTTTTG
LOC_Os10g25010
Os.50669.1.S1_at--262--8751Chr10:12542246..12542270 (25 bp)
TTTCGTTAGCAACATATCGTTTTGT
LOC_Os10g25010
Os.50669.1.S1_at--525--10611Chr10:12542245..12542269 (25 bp)
TTCGTTAGCAACATATCGTTTTGTA
LOC_Os10g25010
Os.50669.1.S1_at--322--9391Chr10:12542244..12542268 (25 bp)
TCGTTAGCAACATATCGTTTTGTAA
LOC_Os10g25010
Os.50669.1.S1_at--519--6771Chr10:12542242..12542266 (25 bp)
GTTAGCAACATATCGTTTTGTAAGC
LOC_Os10g25010
Os.50669.1.S1_at--414--10011Chr10:12542240..12542264 (25 bp)
TAGCAACATATCGTTTTGTAAGCTT
LOC_Os10g25010
Target Sequence 
TAGCTGAATTTCGTTAGCAACATATCGTTTTGTAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis