Browse Element(s) Details


Os.51423.1.S1_at

Description gb:AK062766.1
DB_XREF= gi:32972784
TID=Os.51423.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-H09, full insert sequence.
FL= gb:AK062766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1464011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51423.1.S1_at--753--9351Chr01:8190288..8190312 (25 bp)
TCGCAAAACATCTCACGCAGCAGCA
LOC_Os01g14640
Os.51423.1.S1_at--340--10011Chr01:8190315..8190339 (25 bp)
TAGCAAGCTAGCTTGCCAAGCCACA
LOC_Os01g14640
Os.51423.1.S1_at--1103--10291Chr01:8190967..8190991 (25 bp)
TTTCTGGACTCTTAAGCACCCCTGA
LOC_Os01g14640
Os.51423.1.S1_at--976--8511Chr01:8190971..8190995 (25 bp)
TGGACTCTTAAGCACCCCTGAGCTG
LOC_Os01g14640
Os.51423.1.S1_at--26--9571Chr01:8190976..8191000 (25 bp)
TCTTAAGCACCCCTGAGCTGATGTA
LOC_Os01g14640
Os.51423.1.S1_at--576--9791Chr01:8190979..8191003 (25 bp)
TAAGCACCCCTGAGCTGATGTAAGT
LOC_Os01g14640
Os.51423.1.S1_at--1124--5071Chr01:8190982..8191006 (25 bp)
GCACCCCTGAGCTGATGTAAGTAGT
LOC_Os01g14640
Os.51423.1.S1_at--561--4751Chr01:8190992..8191016 (25 bp)
GCTGATGTAAGTAGTGGCTGGCCAT
LOC_Os01g14640
Os.51423.1.S1_at--13--7531Chr01:8191005..8191029 (25 bp)
GTGGCTGGCCATTTCGGACTAATTA
LOC_Os01g14640
Os.51423.1.S1_at--805--8331Chr01:8191007..8191031 (25 bp)
GGCTGGCCATTTCGGACTAATTAAA
LOC_Os01g14640
Os.51423.1.S1_at--702--8451Chr01:8191010..8191034 (25 bp)
TGGCCATTTCGGACTAATTAAATTT
LOC_Os01g14640
Target Sequence 
TCGCAAAACATCTCACGCAGCAGCAGCTAGCAAGCTAGCTTGCCAAGCCACAGCCATGGCGGCTTTGCTCGGAGCTCTCC
GCGGCAAGCTGCACGGCTGCGCGCTGCGCCTGCGCGGCGATTCGCTGCCCGTCGTCGTCTCCGTCCTCGCCGTGGCTGCT
CTGTGCGCCACCGCTCTCTCGAGGACGGCGAGGAGGTGGTGTTCGCCGGCAGGCTGGCCGCCGTCTGCGGCGGCGACGGC
GACGATGTCGAGGAGGAGCTCGCGGCGCTGCGGGTGGACCGGCTGGCGGAGGGCGTGTGGGACAGCTACTTCGGCGGGTG
GTCGAGGTGGAACTACGTGACGGATGGGCACTACTACGACGAAGACGCCACCATTTTTCTGGACTCTTAAGCACCCCTGA
GCTGATGTAAGTAGTGGCTGGCCATTTCGGACTAATTAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis