Browse Element(s) Details


Os.51602.1.S1_at

Description gb:AK063149.1
DB_XREF= gi:32973167
TID=Os.51602.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H05, full insert sequence.
FL= gb:AK063149.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5072011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein
LOC_Os05g50740OsAffx.22940.2.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.1.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.3.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.3.S1_x_at9/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.18.S1_x_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.2.S1_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.31552.2.S1_at1/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50750Os.7939.1.S1_at11/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50750Os.32943.2.S1_x_at1/115+29010289..29015582AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51602.1.S1_at--596--5931Chr05:28988359..28988383 (25 bp)
GAGCACCACGGAGTTCTACGTCGAC
LOC_Os05g50720
Os.51602.1.S1_at--247--7311Chr05:28988674..28988698 (25 bp)
GTGCGTCGCGGACTTCAGCAGCCAC
LOC_Os05g50720
Os.51602.1.S1_at--947--1691Chr05:28988693..28988717 (25 bp)
AGCCACTGATCTCGCAACGGTGCAA
LOC_Os05g50720
Os.51602.1.S1_at--638--1371Chr05:28988733..28988757 (25 bp)
AGAGCGATCCGCCATAGTTTTCAAG
LOC_Os05g50720
Os.51602.1.S1_at--328--10351Chr05:28988764..28988788 (25 bp)
TTTACCTTACTGGAGACGAACGGAT
LOC_Os05g50720
Os.51602.1.S1_at--940--6371Chr05:28988786..28988810 (25 bp)
GATCGGACTAGTGAACCGTTCGCTA
LOC_Os05g50720
Os.51602.1.S1_at--458--8971Chr05:28988797..28988821 (25 bp)
TGAACCGTTCGCTAATTACTCTCCT
LOC_Os05g50720
Os.51602.1.S1_at--837--9531Chr05:28988823..28988847 (25 bp)
TCTAGTCTCTCCCTTGTCAAATTAT
LOC_Os05g50720
Os.51602.1.S1_at--990--9871Chr05:28988879..28988903 (25 bp)
TACTTTCGTTTTGTACCATAAGATG
LOC_Os05g50720
Os.51602.1.S1_at--547--5431Chr05:28988903..28988927 (25 bp)
GTACCACGTTCATCCTAACTTTGAA
LOC_Os05g50720
Os.51602.1.S1_at--69--1611Chr05:28988928..28988952 (25 bp)
AGCTGAGTAAAGTACGCCGAGATTT
LOC_Os05g50720
Target Sequence 
GAGCACCACGGAGTTCTACGTCGACGGCGTGCCGGAGTACGTCGGGCTGGGGAGCGCGCCGCCGGGGGAGGTGGCGGCGC
GGGGCACGAGCCGGGTGCGGGTCGGCATGGACGTGTTCGTCGACAGGGTGGGCGCGGCCGTGGTCGGGGAGGTGCTGTTC
GGCCGCGGCGAGGTGCGGCTGGCGAGCCACACCGCCGTGGACGGCAGGGTGAGCGTGCTGGGCGGCCTGTACGGGCGGCG
CGCGGTGCGCGTGGCGATGAGGTGCCGCGTCGTGCTGCGCGTCTCGGCCGCGGTCGTCGTGGCCGGCTCGCCGTCGTGCG
TCGCGGACTTCAGCAGCCACTGATCTCGCAACGGTGCAAGGCGCGACGCGATCGAGAGCGATCCGCCATAGTTTTCAAGT
TTTTCTTTACCTTACTGGAGACGAACGGATCGGACTAGTGAACCGTTCGCTAATTACTCTCCTCTCTAGTCTCTCCCTTG
TCAAATTATTTCTGTTGATCATATCTTCTTTTTGTTTAATTACTTTCGTTTTGTACCATAAGATGTACCACGTTCATCCT
AACTTTGAAAGCTGAGTAAAGTACGCCGAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis