Browse Element(s) Details


Os.51926.1.S1_at

Description gb:AK064292.1
DB_XREF= gi:32974310
TID=Os.51926.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51926 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H07, full insert sequence.
FL= gb:AK064292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g082108/11NAC-domain containing protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08150OsAffx.22848.3.S1_x_at4/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_at2/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_x_at1/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08160Os.11510.1.S1_s_at1/1111+4278565..4279021transposon protein, putative, unclassified
LOC_Os11g08170OsAffx.18745.1.S1_at11/1111+4281044..4281400hypothetical protein
LOC_Os11g08180OsAffx.18744.1.S1_x_at10/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08180OsAffx.18744.1.S1_at10/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08180OsAffx.14069.1.S1_at1/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08190NANA11+4284877..4287163Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08200Os.50636.1.S1_s_at11/1111+4291064..4293357Aspartic proteinase Asp1 precursor, putative, expressed
LOC_Os11g08210Os.4385.1.S1_at11/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_x_at10/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_at8/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08220Os.55322.1.S1_at11/1111+4310945..4311517expressed protein
LOC_Os11g08230OsAffx.8602.1.S1_s_at11/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230OsAffx.8602.1.S1_x_at7/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.46735.1.S1_at4/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.30575.1.A1_at1/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08240OsAffx.30875.1.S1_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08240OsAffx.30875.1.S1_x_at11/1111+4321940..4322266hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51926.1.S1_at--910--7651NONE
GGGATCTCCCCGGTAAGCAAGAGTA
NONE
Os.51926.1.S1_at--133--6391NONE
GATCTCCCCGGTAAGCAAGAGTAAA
NONE
Os.51926.1.S1_at--503--6091NONE
GAGTAAAAGCAGATCGAATCGAATC
NONE
Os.51926.1.S1_at--176--3271Chr11:4297027..4297051 (25 bp)
CACAACGCCCTCAGGGTTAGTATTT
LOC_Os11g08210
Os.51926.1.S1_at--1144--4531Chr11:4297021..4297045 (25 bp)
GCCCTCAGGGTTAGTATTTACTTCT
LOC_Os11g08210
Os.51926.1.S1_at--643--10331Chr11:4296996..4297020 (25 bp)
TTTAATTACTTACTTCTCCTAATCT
LOC_Os11g08210
Os.51926.1.S1_at--1033--2051Chr11:4296985..4297009 (25 bp)
ACTTCTCCTAATCTAATCATCTCTT
LOC_Os11g08210
Os.51926.1.S1_at--975--9491Chr11:4296982..4297006 (25 bp)
TCTCCTAATCTAATCATCTCTTGCT
LOC_Os11g08210
Os.51926.1.S1_at--258--3071Chr11:4296976..4297000 (25 bp)
AATCTAATCATCTCTTGCTTTCAAT
LOC_Os11g08210
Os.51926.1.S1_at--929--451Chr11:4296967..4296991 (25 bp)
ATCTCTTGCTTTCAATCATTTCTCC
LOC_Os11g08210
Os.51926.1.S1_at--609--10731Chr11:4296962..4296986 (25 bp)
TTGCTTTCAATCATTTCTCCTCACC
LOC_Os11g08210
Target Sequence 
GGGATCTCCCCGGTAAGCAAGAGTAAAAGCAGATCGAATCGAATCGAGGAAATTGAAGTCGAATTCAAATTCAATTAATT
GGGGATTTGGAATTGTTGCAGAGAGGGCGATGGGAGGGGAGAAGGAGTGGTACTTCTTCTCGCCGCGGGACCGGAAGTAC
CCGAACGGGCAGCGGCCGAACAGGGCGGCGGGGACGGGGTACTGGAAGGCGACGGGGGCGGACAAGCCGGTGGGTCGCCG
CGGGCGGTGGCGATCAAGAAGGCGCTCGTCTTCTACGCCGGGAAGCCGCCCAAGGGCGTCAAGACCAACTGGATCATGCA
CGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCGCCGCCCGCAAGCTCTCCAAGTCCTCCCACAACGCCCTCAGGGTTA
GTATTTACTTCTTTTAATTACTTACTTCTCCTAATCTAATCATCTCTTGCTTTCAATCATTTCTCCTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis